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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGCACAAGAAAGTAGAAAGCAGGAGATGGAGAAGTTACTGCTAGAGCAGGAAGTTATGAGGACCTCGCTTCTGCAATGGTGCTATGCCAGCTACAGTGAGgtacttagtcttttccaacatattccagtagtcctatgatccctacccgcaaaagcatttctgcaatgatcagatgcttcattgttgtggttatgcagtt...

Basic information

species Zea mays
transcript GRMZM2G177912_T02
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G177912_T02 (Zea mays), 5'ss of exon 8
lower sequence: LOC_Os05g51530.1 (Oryza sativa), 5'ss of exon 8
AGCACAAGAAAGTAGAAAGCAGGAGATGGAGAAGTTACTGCTAGAGCAGGAAGTTATGAGGACCTCGCTTCTGCAATGGTGCTATGCCAGCTACAGTGAGgtacttagtcttttccaacatattccagtagtcct-------atgatccctacccgcaaaagcatttctgcaatgatcagatgcttcattgttgtggttatgcagtt
|||||| |||||||| ||| | ||| |||| ||| || ||| ||| |||||||  |||||| | || ||||||||||||||||||||||||||||||||||| | | |||||||    | ||||  | || ||||       ||||    |      | ||| | || |  | |  |  ||    ||||| ||||  | ||| |   
AGCACAGGAAAGTAGGAAGGAAGAGCTGGAAAAGCTAATGCAAGACCAGGAAGCAATGAGGGCATCACTTCTGCAATGGTGCTATGCCAGCTACAGTGAGgtgcat-gtctttttaggcttattt-aataatcctgtcaacaatgacatttctttagagaagaacttttttattcttatga-atgtcatttttgtt-tcatgta---
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|148969237|gb|EE019991.2|EE019991
EST:     AAGTTATGAGGACCTCGCTTCTGCAATGGTGCTATGCCAGCTACAGTGAG                         GTTTTCAGTTCCTGGATGCACTTTTGCGCCGTGCGCATATTTGTAGAGAGC
genomic: AAGTTATGAGGACCTCGCTTCTGCAATGGTGCTATGCCAGCTACAGTGAGgtacttagtc ... ttctgtgcagGTTTTCAGTTCCTGGATGCACTTCTGCGCCGTGCGCATATTTGTAGAGAGC
EST: gi|76288289|gb|DV027857.1|DV027857
EST:     AAGTTATGAGGACCTCGCTTCTGCAATGGTGCTATGCCAGCTACAGTGAG                         GTTTTCAGTTCCTGGATGCACTTCTGCGCCGTGCGCATATTTGTAGAGAGC
genomic: AAGTTATGAGGACCTCGCTTCTGCAATGGTGCTATGCCAGCTACAGTGAGgtacttagtc ... ttctgtgcagGTTTTCAGTTCCTGGATGCACTTCTGCGCCGTGCGCATATTTGTAGAGAGC
EST: gi|60338311|gb|DN205284.1|DN205284
EST:     AAGTTATGAGGACCTCGCTTCTGCAATGGTGCTATGCCAGCTACAGTGAG                         GTTTTCAGTTCCTGGATGCACTTCTGCGCCGTGCGCATATTTGTAGAGAGC
genomic: AAGTTATGAGGACCTCGCTTCTGCAATGGTGCTATGCCAGCTACAGTGAGgtacttagtc ... ttctgtgcagGTTTTCAGTTCCTGGATGCACTTCTGCGCCGTGCGCATATTTGTAGAGAGC
EST: gi|60340364|gb|DN207337.1|DN207337
EST:     AAGTTATGAGGACCTCGCTTCTGCAATGGTGCTATGCCAGCTACAGTGAG                         GTTTTCAGTTCCTGGATGCACTTCTGCGCCGTGCGCATATTTGTAGAGAGC
genomic: AAGTTATGAGGACCTCGCTTCTGCAATGGTGCTATGCCAGCTACAGTGAGgtacttagtc ... ttctgtgcagGTTTTCAGTTCCTGGATGCACTTCTGCGCCGTGCGCATATTTGTAGAGAGC
EST: gi|211430021|gb|FL445207.1|FL445207
EST:     AAGTTATGAGGACCTCGCTTCTGCAATGGTGCTATGCCAGCTACAGTGAG                         GTTTTCAGTTCCTGGATGCACTTCTGCGCCGTGCGCATATTTGTAGAGAGC
genomic: AAGTTATGAGGACCTCGCTTCTGCAATGGTGCTATGCCAGCTACAGTGAGgtacttagtc ... ttctgtgcagGTTTTCAGTTCCTGGATGCACTTCTGCGCCGTGCGCATATTTGTAGAGAGC
EST: gi|40337132|gb|CK371202.1|CK371202
EST:     AAGTTATGAGGACCTCGCTTCTGCAATGGTGCTATGCCAGCTACAGTGAG                         GTTTTCAGTTCCTGGATGCACTTCTGCGCCGTGCGCATATTTGTAGAGAGC
genomic: AAGTTATGAGGACCTCGCTTCTGCAATGGTGCTATGCCAGCTACAGTGAGgtacttagtc ... ttctgtgcagGTTTTCAGTTCCTGGATGCACTTCTGCGCCGTGCGCATATTTGTAGAGAGC
EST: gi|71327561|gb|DR800389.1|DR800389
EST:     AAGTTATGAGGACCTCGCTTCTGCAATGGTGCTATGCCAGCTACAGTGAG                         GTTTTCAGTTCCTGGATGCACTTCTGCGCCGTGCGCATATTTGTAGAGAGC
genomic: AAGTTATGAGGACCTCGCTTCTGCAATGGTGCTATGCCAGCTACAGTGAGgtacttagtc ... ttctgtgcagGTTTTCAGTTCCTGGATGCACTTCTGCGCCGTGCGCATATTTGTAGAGAGC
EST: gi|78120130|gb|DV538514.1|DV538514
EST:     TATGCCAGCTACAG-GAGG                         GTTTTCAGTTCCTGGATGCACTTTTGCGCCGTGCGCATATTTGTAGAGAG
genomic: TATGCCAGCTACAGTGA-Ggtacttagtc ... ttctgtgcagGTTTTCAGTTCCTGGATGCACTTCTGCGCCGTGCGCATATTTGTAGAGAG