1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GAACATGAGTATGTTTATTGCCTGGCAATCGTCAAGAGCATGAAGCTCAACATTATTGGACgtaagtttgttacagtatcataataactcttcagttattctatatcatttctagtcttagatagaattttttgcagtgttataatttacctacgacctga...
species | Zea mays |
transcript | GRMZM2G177575_T03 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: TGTTTATTGCCTGGCAATCGTCAAGAGCATGAAGCTCAACATTATTGGAC AAAATTTCATGACTGGTCTTCGTGTTGTGTTCGATCGGGAAAGGAAAATTCEST: gi|91875996|gb|EB405953.1|EB405953
genomic: TGTTTATTGCCTGGCAATCGTCAAGAGCATGAAGCTCAACATTATTGGACgtaagtttgt ... atttttccagAAAATTTCATGACTGGTCTTCGTGTTGTGTTCGATCGGGAAAGGAAAATTC
EST: TGTTTATTGCCTGGCAATCGTCAAGAGCATGAAGCTCAACATTATTGGAC AAAATTTCATGACTGGTCTTCGTGTTGTGTTCGATCGGGAAAGGAAAATTCEST: gi|78110126|gb|DV528541.1|DV528541
genomic: TGTTTATTGCCTGGCAATCGTCAAGAGCATGAAGCTCAACATTATTGGACgtaagtttgt ... atttttccagAAAATTTCATGACTGGTCTTCGTGTTGTGTTCGATCGGGAAAGGAAAATTC
EST: TGTTTATTGCCTGGCAATCGTCAAGAGCATGAAGCTCAACATTATTGGAC AAAATTTCATGACTGGTCTTCGTGTTGTGTTCGATCGGGAAAG-AAAATTCEST: gi|78110125|gb|DV528540.1|DV528540
genomic: TGTTTATTGCCTGGCAATCGTCAAGAGCATGAAGCTCAACATTATTGGACgtaagtttgt ... atttttccagAAAATTTCATGACTGGTCTTCGTGTTGTGTTCGATCGGGAAAGGAAAATTC
EST: TGTTTATTGCCTGGCAATCGTCAAGAGCATGAAGCTCAACATTATTGGAC AAAATTTCATGACTGGTTTTCGTGTTGTGTTCGATCGGGAAAGGAAAATTT
genomic: TGTTTATTGCCTGGCAATCGTCAAGAGCATGAAGCTCAACATTATTGGACgtaagtttgt ... atttttccagAAAATTTCATGACTGGTCTTCGTGTTGTGTTCGATCGGGAAAGGAAAATTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAACATGAGTATGTTTATTGCCTGGCAATCGTCAAGAGCATGAAGCTCAACATTATTGGACgtaagtttgttacagtatcataataactcttcagttattctatatcatttctagtcttagatagaattttttgcagtgttataatttacctacgacctga
- - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - AGCTCA