1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
ATCTGCTATTGGGAAAGCTTTTGCCAGAGCAGACCTGAATGAAGTGCATGAAATATTGCTGCATGATGGATATAATGAGGACGACGAGGCTAATGCTGAGgtaaaagaactatttgccagtaaaccttattccttctatgtttgttgtcgcaacactgtgctttactcttttcagcaagtaccaatccaattactaaagc...
species | Zea mays |
transcript | GRMZM2G177445_T01 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: ATATTGCGTGGCATGATGGATATAATGAGGACGACGAGGCTAATGTTGAG CTATCTCTCCAGTCATGGAATGGTGATATATCTGAGAGCTTTGTTGTTAAGEST: gi|76018064|gb|DT945234.1|DT945234
genomic: ATATTGC-T-GCATGATGGATATAATGAGGACGACGAGGCTAATGCTGAGgtaaaagaac ... gaacttgcagCTATCTCTCCAGTCATGGAATGGTGATATATCTGAGAGCTTTGTTGTTAAG
EST: AAATATTGCTGCATGATGGATATAATGAGGACGACGAGGCTAATGCTGAG CTATCTCTCCAGTCATGGAATGGTGATATATCTGAGAGCTTTGTTGTTAAGEST: gi|4225549|gb|AI396002.1|AI396002
genomic: AAATATTGCTGCATGATGGATATAATGAGGACGACGAGGCTAATGCTGAGgtaaaagaac ... gaacttgcagCTATCTCTCCAGTCATGGAATGGTGATATATCTGAGAGCTTTGTTGTTAAG
EST: AAATATTGCTGCATGATGGATATAATGAGGACGACGAGGCTAATGCTGAG CTATCTCTCCAGTCATGGAATGGTGATATATCTGAGAGCTTTGTTGTTAAG
genomic: AAATATTGCTGCATGATGGATATAATGAGGACGACGAGGCTAATGCTGAGgtaaaagaac ... gaacttgcagCTATCTCTCCAGTCATGGAATGGTGATATATCTGAGAGCTTTGTTGTTAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATCTGCTATTGGGAAAGCTTTTGCCAGAGCAGACCTGAATGAAGTGCATGAAATATTGCTGCATGATGGATATAATGAGGACGACGAGGCTAATGCTGAGgtaaaagaactatttgccagtaaaccttattccttctatgtttgttgtcgcaacactgtgctttactcttttcagcaagtaccaatccaattactaaagc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG