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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTCTTGGGAATAAGTATCAACATAAGTTGCTCGAAATAATTGACGAGTGgttagtattttttttgtgtgccgtacatttatgttgtttattacttccattctaatttctgcttaatgcatgcatgcag

Basic information

species Zea mays
transcript GRMZM2G174990_T02
intron # 8
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211480222|gb|FK977827.1|FK977827
EST:     GTTCTTGGGAATAAGTATCAACATAAGTTGCTCGAAATAATTGACGAGTG                         TGAACTGCCAGAATTTCTTGGTGGCAAATGCAATTGTATTGAAGGTTGCCA
genomic: GTTCTTGGGAATAAGTATCAACATAAGTTGCTCGAAATAATTGACGAGTGgttagtattt ... atgcatgcagTGAACTGCCAGAATTTCTTGGTGGCAAATGCAATTGTATTGAAGGTTGCCA
EST: gi|31353713|gb|CD438070.1|CD438070
EST:     GTTCTTGGGAATAAGTATCAACATAAGTTGCTCGAAATAATTGACGAGTG                         TGAACTGCCAGAATTTCTTGGTGGCAAATGCAATTGTATTGAAGGTTGCCA
genomic: GTTCTTGGGAATAAGTATCAACATAAGTTGCTCGAAATAATTGACGAGTGgttagtattt ... atgcatgcagTGAACTGCCAGAATTTCTTGGTGGCAAATGCAATTGTATTGAAGGTTGCCA
EST: gi|18660585|gb|BM500941.1|BM500941
EST:     GTTGCTGGAAATAATTGACGAGTG                         TGAACTGCCAGAATTTCTTGGTGGCAAATGCAATTGTATTGAAGGTTGCCA
genomic: GTTGCTCGAAATAATTGACGAGTGgttagtattt ... atgcatgcagTGAACTGCCAGAATTTCTTGGTGGCAAATGCAATTGTATTGAAGGTTGCCA
EST: gi|211480218|gb|FK977823.1|FK977823
EST:     GTTCTTGGGAATAAGTATCAACATAAGTTGCTCGAAATAATTGACGAGTG                         TGAACTGCCAGAATTTCTTGGTGGCAAATGCAATTGTATTGAAGGTTGCCA
genomic: GTTCTTGGGAATAAGTATCAACATAAGTTGCTCGAAATAATTGACGAGTGgttagtattt ... atgcatgcagTGAACTGCCAGAATTTCTTGGTGGCAAATGCAATTGTATTGAAGGTTGCCA
EST: gi|211485991|gb|FK977851.1|FK977851
EST:     GTTCTTGGGAATAAGTATCAACATAAGTTGCTCGAAATAATTGACGAGTG                         TGAACTGCCAGAATTTCTTGGTGGCAAATGCAATTGTATTGAAGGTTGCCA
genomic: GTTCTTGGGAATAAGTATCAACATAAGTTGCTCGAAATAATTGACGAGTGgttagtattt ... atgcatgcagTGAACTGCCAGAATTTCTTGGTGGCAAATGCAATTGTATTGAAGGTTGCCA