1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
AGAACCCAAAATCATGATTACAGGGAAGTGGAACAAGTCCCTGAGTTGCCAACCATGTGACCAAGAAGGCGATCCTCTTCCAGGCACGGAGCTGAAGGAGgtcgtactttctttcactttctgctactatggataacgtgtgttatatatatacccataagatgcaatggtggtcacatatttgcggatgactgatgcactgaactggtcatacttgattgactgcag
species | Zea mays |
transcript | GRMZM2G174644_T01 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: AACCATGTGACCAAGAAGGCGATCCTCTTCCAGGCACGGAGCTGAAGGAG ATCTGGAGAGTTGCTCCTGCCCCACAGGGCGACAAGTACCAGTACACACACEST: gi|31349767|gb|CD434124.1|CD434124
genomic: AACCATGTGACCAAGAAGGCGATCCTCTTCCAGGCACGGAGCTGAAGGAGgtcgtacttt ... ttgactgcagATCTGGAGAGTTGCTCCTGCCCCACAGGGCGACAAGTATCAGTACACACAC
EST: AACCATGTGACCAAGAAGGCGATCCTCTTCCAGGCACGGAGCTGAAGGAG ATCTGGAGAGTTGCTCCTGCCCCACAGGGCGACAAGTATCAGTACACACACEST: gi|211409590|gb|FL109891.1|FL109891
genomic: AACCATGTGACCAAGAAGGCGATCCTCTTCCAGGCACGGAGCTGAAGGAGgtcgtacttt ... ttgactgcagATCTGGAGAGTTGCTCCTGCCCCACAGGGCGACAAGTATCAGTACACACAC
EST: AACCATGTGACCAAGAAGGCGATCCTCTTCCAGGCACGGAGCTGAAGGAG ATCTGGAGAGTTGCTCCTGCCCCACAGGGCGACAAGTATCAGTACACACACEST: gi|78025234|gb|DV493621.1|DV493621
genomic: AACCATGTGACCAAGAAGGCGATCCTCTTCCAGGCACGGAGCTGAAGGAGgtcgtacttt ... ttgactgcagATCTGGAGAGTTGCTCCTGCCCCACAGGGCGACAAGTATCAGTACACACAC
EST: AACCATGTGACCAAGAAGGCGATCCTCTTCCAGGCACGGAGCTGAAGGAG ATCTGGAGAGTTGCTCCTGCCCCACAGGGCGACAAGTATCAGTACAEST: gi|211409591|gb|FL109892.1|FL109892
genomic: AACCATGTGACCAAGAAGGCGATCCTCTTCCAGGCACGGAGCTGAAGGAGgtcgtacttt ... ttgactgcagATCTGGAGAGTTGCTCCTGCCCCACAGGGCGACAAGTATCAGTACA
EST: AACCATGTGACCAAGAAGGCGATCCTCTTCCAGGCACGGAGCTGAAGGAG ATCTGGAGAGTTGCTCCTGCCCCACAGGGCGACAAGTATCAGTACACACACEST: gi|213167873|gb|FM190575.1|FM190575
genomic: AACCATGTGACCAAGAAGGCGATCCTCTTCCAGGCACGGAGCTGAAGGAGgtcgtacttt ... ttgactgcagATCTGGAGAGTTGCTCCTGCCCCACAGGGCGACAAGTATCAGTACACACAC
EST: AACCATGTGACCAAGAAGGCGATCCTCTTCCAGGCACGGAGCTGAAGGAG ATCTGGAGAGTTGCTCCTGCCCCACAGGGCGACAAGTATCAGTACACACACEST: gi|78116425|gb|DV534812.1|DV534812
genomic: AACCATGTGACCAAGAAGGCGATCCTCTTCCAGGCACGGAGCTGAAGGAGgtcgtacttt ... ttgactgcagATCTGGAGAGTTGCTCCTGCCCCACAGGGCGACAAGTATCAGTACACACAC
EST: AACCATGTGACCAAGAAGGCGATCCTCTTCCAGGCACGGAGCTGAAGGAG ATCTGGAGAGTTGCTCCTGCCCCACAGGGCGACAAGTATCAGTACACACACEST: gi|83278633|gb|DV942641.1|DV942641
genomic: AACCATGTGACCAAGAAGGCGATCCTCTTCCAGGCACGGAGCTGAAGGAGgtcgtacttt ... ttgactgcagATCTGGAGAGTTGCTCCTGCCCCACAGGGCGACAAGTATCAGTACACACAC
EST: TGTGACCAAGAAGGCGATCCTCTTCCAGGCACGGAGCTGAAGGAG ATCTGGAGAGTTGCTCCTGCCCCACAGGGCGACAAGTATCAGTACACACACEST: gi|60343663|gb|DN210636.1|DN210636
genomic: TGTGACCAAGAAGGCGATCCTCTTCCAGGCACGGAGCTGAAGGAGgtcgtacttt ... ttgactgcagATCTGGAGAGTTGCTCCTGCCCCACAGGGCGACAAGTATCAGTACACACAC
EST: AACCATGTGACCAAGAAGGCGATCCTCTTCCAGGCACGGAGCTGAAGGAG ATCTGGAGAGTTGCTCCTGCCCCACAGGGCGACAAGTATCAGTACACACACEST: gi|76011658|gb|DT938828.1|DT938828
genomic: AACCATGTGACCAAGAAGGCGATCCTCTTCCAGGCACGGAGCTGAAGGAGgtcgtacttt ... ttgactgcagATCTGGAGAGTTGCTCCTGCCCCACAGGGCGACAAGTATCAGTACACACAC
EST: AACCATGTGACCAAGAAGGCGATCCTCTTCCAGGCACGGAGCTGAAGGAG ATCTGGAGAGTTGCTCCTGCCCCACAGGGCGACAAGTATCAGTACACACACEST: gi|211409595|gb|FL109896.1|FL109896
genomic: AACCATGTGACCAAGAAGGCGATCCTCTTCCAGGCACGGAGCTGAAGGAGgtcgtacttt ... ttgactgcagATCTGGAGAGTTGCTCCTGCCCCACAGGGCGACAAGTATCAGTACACACAC
EST: AACCATGTGACCAAGAAGGCGATCCTCTTCCAGGCACGGAGCTGAAGGAG ATCTGGAGAGTTGCTCCTGCCCCACAGGGCGACAAGTATCAGTACACACACEST: gi|5499280|gb|AI855147.1|AI855147
genomic: AACCATGTGACCAAGAAGGCGATCCTCTTCCAGGCACGGAGCTGAAGGAGgtcgtacttt ... ttgactgcagATCTGGAGAGTTGCTCCTGCCCCACAGGGCGACAAGTATCAGTACACACAC
EST: AACCATGTGACCAAGAAGGCGATCCTCTTCCAGGCACGGAGCTGAAGGAG ATCTGGAGAGTTGCTCCTGCCCCACAGGGCGACAAGTATCAGTACACACAC
genomic: AACCATGTGACCAAGAAGGCGATCCTCTTCCAGGCACGGAGCTGAAGGAGgtcgtacttt ... ttgactgcagATCTGGAGAGTTGCTCCTGCCCCACAGGGCGACAAGTATCAGTACACACAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGAACCCAAAATCATGATTACAGGGAAGTGGAACAAGTCCCTGAGTTGCCAACCATGTGACCAAGAAGGCGATCCTCTTCCAGGCACGGAGCTGAAGGAGgtcgtactttctttcactttctgctactatggataacgtgtgttatatatatacccataagatgcaatggtggtcacatatttgcggatgactgatgcactgaactggtcatacttgattgactgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG