1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
CCTGTCACTCATTCTGTGGGCAACTGTGTTAAACGTGTTGTGGTCATTGTAACATCAGTGCTGTTCTTCAGGACACCTGTTTCTCCTATCAACTCTCTCGgtaagcatgtttcttaacctgtttctctgtctttgttctatttcatccttctgttgtatcaccattacatgctttcatctgtgtgtatag
species | Zea mays |
transcript | GRMZM2G174107_T01 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: AACATCAGTGCTGTTCTTCAGGACACCTGTTTCTCCTATCAACTCTCTCG GTACTGCGATTGCACTTGCCGGAGTTTTCCTGTACTCACAGCTCAAGCGACEST: gi|16378321|gb|BI992391.1|BI992391
genomic: AACATCAGTGCTGTTCTTCAGGACACCTGTTTCTCCTATCAACTCTCTCGgtaagcatgt ... gtgtgtatagGTACTGCGATTGCACTTGCCGGAGTTTTCCTGTACTCACAGCTCAAGCGAC
EST: AACATCAGTGCTGTTCTTCAGGACACCTGTTTCTCCTATCAACTCTCTCG GTACTGCGATTGCACTTGCCGGAGTTTTCCTGTACTCACAGCTCAAGCGACEST: gi|211376283|gb|FL144045.1|FL144045
genomic: AACATCAGTGCTGTTCTTCAGGACACCTGTTTCTCCTATCAACTCTCTCGgtaagcatgt ... gtgtgtatagGTACTGCGATTGCACTTGCCGGAGTTTTCCTGTACTCACAGCTCAAGCGAC
EST: CATCAGTGCTGTTCTTCAGGACACCTGTTTCTCCTATCAACTCTCTCG GTACTGCGATTGCACTTGCCGGAGTTTTCCTGTACTCACAGCTCAAGCGACEST: gi|16377738|gb|BI992093.1|BI992093
genomic: CATCAGTGCTGTTCTTCAGGACACCTGTTTCTCCTATCAACTCTCTCGgtaagcatgt ... gtgtgtatagGTACTGCGATTGCACTTGCCGGAGTTTTCCTGTACTCACAGCTCAAGCGAC
EST: AACATCAGTGCTGTTCTTCAGGACACCTGTTTCTCCTATCAACTCTCTCG GTACTGCGATTGCACTTGCCGGAGTTTTCCTGTACTCACAGCTCAAGCGACEST: gi|13177801|gb|BG349164.1|BG349164
genomic: AACATCAGTGCTGTTCTTCAGGACACCTGTTTCTCCTATCAACTCTCTCGgtaagcatgt ... gtgtgtatagGTACTGCGATTGCACTTGCCGGAGTTTTCCTGTACTCACAGCTCAAGCGAC
EST: AACATCAGTGCTGTTCTTCAGGACACCTGTTTCTCCTATCAACTCTCTCG GTACTGCGATTGCACTTGCCGGAGTTTTCCTGTACTCACAGCTCAAGCGACEST: gi|13178610|gb|BG349868.1|BG349868
genomic: AACATCAGTGCTGTTCTTCAGGACACCTGTTTCTCCTATCAACTCTCTCGgtaagcatgt ... gtgtgtatagGTACTGCGATTGCACTTGCCGGAGTTTTCCTGTACTCACAGCTCAAGCGAC
EST: AACAACAGTGCTGTTCTTCAGGACACCTGTTTCTCCTATCAACTCTCTCG GTACTGCGATTGCACTTGCCGGAGTTTTCCTGTACTCACAGCTCAAGCGACEST: gi|13150806|gb|BG321128.1|BG321128
genomic: AACATCAGTGCTGTTCTTCAGGACACCTGTTTCTCCTATCAACTCTCTCGgtaagcatgt ... gtgtgtatagGTACTGCGATTGCACTTGCCGGAGTTTTCCTGTACTCACAGCTCAAGCGAC
EST: AACATCAGTGCTGTTCTTCAGGACACCTGTTTCTCCTATCAACTCTCTCG GTACTGCGATTGCACTTGCCGGAGTTTTCCTGTACTCACAGCTCAAGCGACEST: gi|148937400|gb|EC881580.2|EC881580
genomic: AACATCAGTGCTGTTCTTCAGGACACCTGTTTCTCCTATCAACTCTCTCGgtaagcatgt ... gtgtgtatagGTACTGCGATTGCACTTGCCGGAGTTTTCCTGTACTCACAGCTCAAGCGAC
EST: AACATCAGTGCTGTTCTTCAGGACACCTGTTTCTCCTATCAACTCTCTCG GTACTGCGATTGCACTTGCCGGAGTTTTCCTGTACTCACAGCTCAAGCGACEST: gi|5688709|gb|AI941724.1|AI941724
genomic: AACATCAGTGCTGTTCTTCAGGACACCTGTTTCTCCTATCAACTCTCTCGgtaagcatgt ... gtgtgtatagGTACTGCGATTGCACTTGCCGGAGTTTTCCTGTACTCACAGCTCAAGCGAC
EST: AACATCAGTGCTGTTCTTCAGGACACCTGTTTCTCCTATCAACTCTCTCG GTACTGCGATTGCACTTGCCGGAGTTTTCCTGTACTCACAGCTCAAGCGACEST: gi|211517932|gb|FL479804.1|FL479804
genomic: AACATCAGTGCTGTTCTTCAGGACACCTGTTTCTCCTATCAACTCTCTCGgtaagcatgt ... gtgtgtatagGTACTGCGATTGCACTTGCCGGAGTTTTCCTGTACTCACAGCTCAAGCGAC
EST: AACATCAGTGCTGTTCTTCAGGACACCTGTTTCTCCTATCAACTCTCTCG GTACTGCGATTGCACTTGCCGGAGTTTTCCTGTACTCACAGCTCAAGCGACEST: gi|7227535|gb|AW566176.1|AW566176
genomic: AACATCAGTGCTGTTCTTCAGGACACCTGTTTCTCCTATCAACTCTCTCGgtaagcatgt ... gtgtgtatagGTACTGCGATTGCACTTGCCGGAGTTTTCCTGTACTCACAGCTCAAGCGAC
EST: AACATCAGTGCTGTTCTTCAGGACACCTGTTTCTCCTATCAACTCTCTCG GTACTGCGATTGCACTTGCCGGAGTTTTCCTGTACTCACAGCTCAAGCGACEST: gi|13382072|gb|BG458747.1|BG458747
genomic: AACATCAGTGCTGTTCTTCAGGACACCTGTTTCTCCTATCAACTCTCTCGgtaagcatgt ... gtgtgtatagGTACTGCGATTGCACTTGCCGGAGTTTTCCTGTACTCACAGCTCAAGCGAC
EST: CTATCAACTCTCTCG GTACTGCGATTGCACTTGCCGGAGTTTTCCTGTACTCACAGCTCAAGCGACEST: gi|148940598|gb|EC885404.2|EC885404
genomic: CTATCAACTCTCTCGgtaagcatgt ... gtgtgtatagGTACTGCGATTGCACTTGCCGGAGTTTTCCTGTACTCACAGCTCAAGCGAC
EST: AACATCAGTGCTGTTCTTCAGGACACCTGTTTCTCCTATCAACTCTCTCG GTACTGCGATTGCACTTGCCGGAGTTTTCCTGTACTCACAGCTCAAGCGACEST: gi|83279370|gb|DV943378.1|DV943378
genomic: AACATCAGTGCTGTTCTTCAGGACACCTGTTTCTCCTATCAACTCTCTCGgtaagcatgt ... gtgtgtatagGTACTGCGATTGCACTTGCCGGAGTTTTCCTGTACTCACAGCTCAAGCGAC
EST: AACATCAGTGCTGTTCTTCAGGACACCTGTTTCTCCTATCAACTCTCTCG GTACTGCGATTGCACTTGCCGGAGTTTTCCTGTACTCACAGCTCAAGCGACEST: gi|15427333|gb|BI543155.1|BI543155
genomic: AACATCAGTGCTGTTCTTCAGGACACCTGTTTCTCCTATCAACTCTCTCGgtaagcatgt ... gtgtgtatagGTACTGCGATTGCACTTGCCGGAGTTTTCCTGTACTCACAGCTCAAGCGAC
EST: AACATCAGTGCTGTTCTTCAGGACACCTGTTTCTCCTATCAACTCTCTCG GTACTGCGATTGCACTTGCCGGAGTTTTCCTGTACTCACAGCTCAAGCGACEST: gi|7162621|gb|AW520243.1|AW520243
genomic: AACATCAGTGCTGTTCTTCAGGACACCTGTTTCTCCTATCAACTCTCTCGgtaagcatgt ... gtgtgtatagGTACTGCGATTGCACTTGCCGGAGTTTTCCTGTACTCACAGCTCAAGCGAC
EST: AACATCAGTGCTGTTCTTCAGGACACCTGTTTCTCCTATCAACTCTCTCG GTACTGCGATTGCACTTGCCGGAGTTTTCCTGTACTCEST: gi|211376284|gb|FL144046.1|FL144046
genomic: AACATCAGTGCTGTTCTTCAGGACACCTGTTTCTCCTATCAACTCTCTCGgtaagcatgt ... gtgtgtatagGTACTGCGATTGCACTTGCCGGAGTTTTCCTGTACTC
EST: AACATCAGTGCTGTTCTTCAGGACACCTGTTTCTCCTATCAACTCTCTCG GTACTGCGATTGCACTTGCCGGAGTTTTCCTGTACTCACAGCTCAAGCGACEST: gi|13126160|gb|BG316730.1|BG316730
genomic: AACATCAGTGCTGTTCTTCAGGACACCTGTTTCTCCTATCAACTCTCTCGgtaagcatgt ... gtgtgtatagGTACTGCGATTGCACTTGCCGGAGTTTTCCTGTACTCACAGCTCAAGCGAC
EST: AACATCAGTGCTGTTCTTCAGGACACCTGTTTCTCCTATCAACTCTCTCG GTACTGCGATTGCACTTGCCGGAGTTTTCCTGTACTCACAGCTCAAGCGACEST: gi|4624425|gb|AI615258.1|AI615258
genomic: AACATCAGTGCTGTTCTTCAGGACACCTGTTTCTCCTATCAACTCTCTCGgtaagcatgt ... gtgtgtatagGTACTGCGATTGCACTTGCCGGAGTTTTCCTGTACTCACAGCTCAAGCGAC
EST: AACATCAGTGCTGTTCTTCAGGACACCTGTTTCTCCTATCAACTCTCTCG GTACTGCGATTGCACTTGCCGGAGTTTTCCTGTACTCACAGCTCAAGCGAC
genomic: AACATCAGTGCTGTTCTTCAGGACACCTGTTTCTCCTATCAACTCTCTCGgtaagcatgt ... gtgtgtatagGTACTGCGATTGCACTTGCCGGAGTTTTCCTGTACTCACAGCTCAAGCGAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCTGTCACTCATTCTGTGGGCAACTGTGTTAAACGTGTTGTGGTCATTGTAACATCAGTGCTGTTCTTCAGGACACCTGTTTCTCCTATCAACTCTCTCGgtaagcatgtttcttaacctgtttctctgtctttgttctatttcatccttctgttgtatcaccattacatgctttcatctgtgtgtatag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT