1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
ATCTAAGGCTTTAAGGGAGGATGAACTGTTGTATCTTAGATTGCAGTTTAAGCTGCTCGAGCCCAGAGACGGGCTCGTATCGCTCGACAACTTTCGGACGgtgcgttatttgttgtttgctgatttgcctgcctcgtcaaaatatggagacatgtcaaaaagcagaacgcttgctcatgtcgcattatgttgatgttctaactcctgaactcgcgtggtgtgtgaccag
species | Zea mays |
transcript | GRMZM2G173928_T01 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: AGCTGCTCGAGCCCAGAGACGGGCTCGTATCGCTCGACAACTTTCGGACG GCTCTGACGAGATACGTAACTGATGCTATGAGAGAATCAAGGGTTCTTGAGEST: gi|37383606|gb|CF628823.1|CF628823
genomic: AGCTGCTCGAGCCCAGAGACGGGCTCGTATCGCTCGACAACTTTCGGACGgtgcgttatt ... gtgtgaccagGCTCTGACGAGATACGTAACTGATGCTATGAGAGAATCAAGGGTTCTTGAG
EST: AGCTGCTCGAGCCCAGAGACGGGCTCGTATCGCTCGACAACTTTCGGACG GCTCTGACGAGATACGTAACTGATGCTATGAGAGAATCAAGGGTTCTTGAGEST: gi|148929165|gb|EC874655.2|EC874655
genomic: AGCTGCTCGAGCCCAGAGACGGGCTCGTATCGCTCGACAACTTTCGGACGgtgcgttatt ... gtgtgaccagGCTCTGACGAGATACGTAACTGATGCTATGAGAGAATCAAGGGTTCTTGAG
EST: AGTTGCTCGAGCCCAGAGACGGGCTCGTATCGCTCGACAACTTTCGGACG GGTCTGACGAGATACGTAACTGATGCTATGAGAGAATCAAGGGTTCTTGAG
genomic: AGCTGCTCGAGCCCAGAGACGGGCTCGTATCGCTCGACAACTTTCGGACGgtgcgttatt ... gtgtgaccagGCTCTGACGAGATACGTAACTGATGCTATGAGAGAATCAAGGGTTCTTGAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATCTAAGGCTTTAAGGGAGGATGAACTGTTGTATCTTAGATTGCAGTTTAAGCTGCTCGAGCCCAGAGACGGGCTCGTATCGCTCGACAACTTTCGGACGgtgcgttatttgttgtttgctgatttgcctgcctcgtcaaaatatggagacatgtcaaaaagcagaacgcttgctcatgtcgcattatgttgatgttctaactcctgaactcgcgtggtgtgtgaccag
- - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT