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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGTTACAAAAAAATCAGTGCGTGGAATATGGTCACGCAGATCAAAACTCAATCTTGTTGGTGCCCATATAAATGTCTTTACTGGTGAATGGACACAGAAGgtttggttttatcctttcagtggtagttttaatttttaaagcaactgctagcatcctctcattaatattttaactctgtatttcattatatttgtggagc...

Basic information

species Zea mays
transcript GRMZM2G173868_T04
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G173868_T02 (Zea mays), 5'ss of exon 8
lower sequence: LOC_Os01g56670.3 (Oryza sativa), 5'ss of exon 8
AGTTACAAAAAAATCAGTGCGTGGAATATGGTCACGCAGATCAAAACTCAATCTTGTTGGTGCCCATATAAATGTCTTTACTGGTGAATGGACACAGAAGgtttgg--ttttatcctttcagtggtagttttaatttttaaagcaa--ctgctagcatcctctcattaatattttaactctgtatttcattat-atttgtggagc
|||||||||||| || ||||||||||||||| ||||||| || |||||  | ||||||||||||||||||||||| |||||||||||||||||||||||||| |    ||| ||  | |||||| ||||||| |   |  | |  |    ||| || |  | |   | ||||   |||    | ||  |  || |  |       
AGTTACAAAAAACTCTGTGCGTGGAATATGGGCACGCAGGTCGAAACTTGACCTTGTTGGTGCCCATATAAATGTATTTACTGGTGAATGGACACAGAAGgtattaactttcattatctcagtgatagttttgaaactagatgttatatcgcttgcgttgtgttgctgatatgcaaacgtcttgttgtagaatgaactac-----

upper sequence: GRMZM2G173868_T02 (Zea mays), 5'ss of exon 8
lower sequence: AT5G43710.1 (Arabidopsis thaliana), 5'ss of exon 8
AGTTACAAAAAAATCAGTGCGTGGAATATGGTCACGCAGATCAAAACTCAATCTTGTTGGTGCCCATATAAATGTCTTTACTGGTGAATGGACACAGAAGgtttggttttatcctttcagtggtagttttaatttttaaagcaactgctagcatcctctcattaa--tattttaactctgtatttcattatatttgtggagc-------------------
|||| |||| ||  | ||| | ||| ||||| ||||  | ||||| ||| |  | |||||||| || || ||||||||||| ||||||||||||||||||||        ||   ||| ||    ||   ||    ||  |        | | |    |||  ||  || ||   || | | | |||    | || |  |                     
AGTTGCAAAGAATGCGGTGAGGGGACTATGGGCACGTCGTTCAAATCTCGACTTGGTTGGTGCTCACATCAATGTCTTTACAGGTGAATGGACACAGAAGgtaacaaaaaatggcttctgtatatgtcagaagaactacggtt-tgatgaactttgcttcaacaaactaattagtctttttttgtcacccaaattctaaaatggtagtgtttacttggcag

upper sequence: GRMZM2G173868_T02 (Zea mays), 5'ss of exon 8
lower sequence: Vv05s0020g04650.t01 (Vitis vinifera), 5'ss of exon 9
AGTTACAAAAAAATCAGTGCGTGGAATATGGTCACGCAGATCAAAACTCAATCTTGTTGGTGCCCATATAAATGTCTTTACTGGTGAATGGACACAGAAGgt----ttggttttatcctttcagtggtagttttaatttttaaagcaactgctagcatcctctcat---taatattttaactctgta-tttcattatatttgtggagc
||||||||| ||  |||||| |||| ||||| | ||| ||||||| || || || |||||||| ||||| ||||| ||||| ||||||||||||||||||||    || |||||| | |   |    | ||       ||     | | | |||  ||      ||   || |  ||||||    || |||| |||| |||       
AGTTACAAAGAATGCAGTGCATGGATTATGGGCTCGCCGATCAAAGCTGAACCTAGTTGGTGCTCATATCAATGTTTTTACAGGTGAATGGACACAGAAGgtaacatttgttttaacatgaaaaca-ttgtaagggccttcttttctatttctaagatagagaaatgcttagttatttaacatcataatttctttattttt-------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71445066|gb|DR826116.1|DR826116
EST:     ATCTTGTTGGTGCCCATATAAATGTCTTTACTGGTGAATGGACACAGAAG                         GATGCAGGAATTGGCACAAGCATTGATTCATTCTATGAATATCTTCTAAAG
genomic: ATCTTGTTGGTGCCCATATAAATGTCTTTACTGGTGAATGGACACAGAAGgtttggtttt ... ctggttgtagGATGCAGGAATTGGCACAAGCATTGATTCATTCTATGAATATCTTCTAAAG