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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTATTCCTGATGTTGCAGCGTTTCCCTGTTGAGTCAAAAGGCCGCCGGAAAAAATTGAATGAGgtactttgctacctgttgtcatccactatagaaatatatctgatgacgtgtttgtttaacattaaatacattatccccttttacgcag

Basic information

species Zea mays
transcript GRMZM2G171469_T02
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G171469_T03 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os03g02850.2 (Oryza sativa), 5'ss of exon 8
GTTATTCCTGATGTTGCAGCGTTTCCCTGTTGAGTCAAAAGGCCGCCGGAAAAAATTGAATGAGgtactttgctacctgttgtcatccactatagaaatatatctgatgacgtgtttgtttaacattaaatacattatccccttttacgcag
| |||| |||||||| |||||||| || ||||| ||||||||  | || ||||| ||||||||||||||     | || || ||||   ||        | |  | ||    |   |  ||  ||||    |||  |||  ||||| |  ||
GCTATTTCTGATGTTACAGCGTTTTCCAGTTGAATCAAAAGGAAGGCGTAAAAAGTTGAATGAGgtact-----atcttttatcattggcttctattccagaattaatactttagataatttgcatttctaacac-atctactttttcatag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|78108686|gb|DV527104.1|DV527104
EST:     GCAGCGGTTTCC-TGTTGAGTCAAAAGGCCGCCGGAAAAAATTGAATGAG                         GTTGGCTATGTGACCACCCTTTGCTTT
genomic: GCAGCG-TTTCCCTGTTGAGTCAAAAGGCCGCCGGAAAAAATTGAATGAGgtactttgct ... ttttacgcagGTTGGCTATGTGACCACCATTTGCTTT
EST: gi|91873273|gb|EB403230.1|EB403230
EST:     GCAGCGTTTCCCTGTTGAGTCAAAAGGCCGCCGGAAAAAATTTGA-TGAA                         GTTGGCTATGTGACCACCATTTGCTTTGGTTGCTTCTTGATCAGATGCAT
genomic: GCAGCGTTTCCCTGTTGAGTCAAAAGGCCGCCGGAAAAAATT-GAATGAGgtactttgct ... ttttacgcagGTTGGCTATGTGACCACCATTTGCTTTGGTTGCTTCTTGATCAGATGCAT
EST: gi|5895618|gb|AW036864.1|AW036864
EST:     TGCAGCGTTTCCCTGTTGAGTCAAAAGGCCGCCGGAAAAAATTGAATGAG                         GTTGGCTATGTGACCACCATTTGCTTTGGTTGCTTCTTGATCAGATGCATA
genomic: TGCAGCGTTTCCCTGTTGAGTCAAAAGGCCGCCGGAAAAAATTGAATGAGgtactttgct ... ttttacgcagGTTGGCTATGTGACCACCATTTGCTTTGGTTGCTTCTTGATCAGATGCATA