1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
AACATATCACGTGCTGATGATGCATCAAGACACATCGCCTGATCTCAGAACGGTTGGCAACAAGCTGAAAGAAGTCTTCAGGgtattcatctttcagtcttaatgttaaattattctaccacttgttcagtccctacaaaacacattttcttgtttggttttcag
species | Zea mays |
transcript | GRMZM2G171373_T01 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: CATCGCCTGATCTCAGAACGGTTGGCAACAAGCTGAAAGAAGTCTTCAGG ATAGAAGACACCTGTTTCAAAACAAGGAAATTGGTAGTGGATGTCTGCGAGEST: gi|71757200|gb|DR955137.1|DR955137
genomic: CATCGCCTGATCTCAGAACGGTTGGCAACAAGCTGAAAGAAGTCTTCAGGgtattcatct ... tggttttcagATAGAAGACACCTGTTTCAAAACAAGGAAATTGGTAGTGGATGTCTGCGAG
EST: CATCGCCTGATCTCAGAACGGTTGGCAACAAGCTGAAAGAAGTCTTCAGG ATAGAAGACACCTGTTTCAAAACAAGGAAATTGGTAGTGGATGTCTGCGAGEST: gi|78089618|gb|DV517992.1|DV517992
genomic: CATCGCCTGATCTCAGAACGGTTGGCAACAAGCTGAAAGAAGTCTTCAGGgtattcatct ... tggttttcagATAGAAGACACCTGTTTCAAAACAAGGAAATTGGTAGTGGATGTCTGCGAG
EST: CATCGCCTGATCTCAGAACGGTTGGCAACAAGCTGAAAGAAGTCTTCA-G ---GAAGACACCTGTTTCAAAACAAGGAAATTGGTAGTGGATGTCTGCGAGEST: gi|78087465|gb|DV515858.1|DV515858
genomic: CATCGCCTGATCTCAGAACGGTTGGCAACAAGCTGAAAGAAGTCTTCAGGgtattcatct ... tggttttcagATAGAAGACACCTGTTTCAAAACAAGGAAATTGGTAGTGGATGTCTGCGAG
EST: CATCGCCTGATCTCAGAACGGTTGGCAACAAGCTGAAAGAAGTCTTCAGG ATAGAAGACACCTGTTTCAAAACAAGGAAATTGGTAGTGGATGTCTGCGAG
genomic: CATCGCCTGATCTCAGAACGGTTGGCAACAAGCTGAAAGAAGTCTTCAGGgtattcatct ... tggttttcagATAGAAGACACCTGTTTCAAAACAAGGAAATTGGTAGTGGATGTCTGCGAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AACATATCACGTGCTGATGATGCATCAAGACACATCGCCTGATCTCAGAACGGTTGGCAACAAGCTGAAAGAAGTCTTCAGGgtattcatctttcagtcttaatgttaaattattctaccacttgttcagtccctacaaaacacattttcttgtttggttttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT