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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCTATGGTTCCTTTCTCCTGCGAGATCTGCCATTTGATGCCATTCAATTTTGCATATATGAGCAACTCCGAATTGGTTATCGATTAACGgtatttatctcacttttatttaatgaatccaatgtattgttcttgaatagttccgtgttcttttgaaccatcacgttctgaatactgattgttaattcag...

Basic information

species Zea mays
transcript GRMZM2G169914_T01
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G169914_T01 (Zea mays), 5'ss of exon 8
lower sequence: LOC_Os07g19460.1 (Oryza sativa), 5'ss of exon 8
GGCTATGGTTCCTTTCTCCTGCGAGATCTGCCATTTGATGCCATTCAATTTTGCATATATGAGCAACTCCGAATTGGTTATCGATTAACGgtatttatctcacttttatttaatgaatccaatgtattgttcttgaatagttccgtgttcttttgaaccatcacgt---tctgaatactgattgttaattcag
|||||||||||||||||  |||||||||| ||||||||||| ||||| |||||||||||||||||||| ||||| || |||  | |  |||||||||||||| || |   || |  ||   | |  |    ||    |  ||| |   |   ||  || ||||  |   | |  ||    ||   |   | | 
GGCTATGGTTCCTTTCTGTTGCGAGATCTACCATTTGATGCTATTCAGTTTTGCATATATGAGCAACTTCGAATAGGCTATAAACTGGCGgtatttatctcatttatccctattctat---aggcgtaagcctcttctcattctgatgtaaatttgactatcaattatgtttctatgaaaatgcctgcctgac

upper sequence: GRMZM2G169914_T01 (Zea mays), 5'ss of exon 8
lower sequence: AT4G39460.1 (Arabidopsis thaliana), 5'ss of exon 9
GGCTATGGTTCCTTTCTCCTGCGAGATCTGCCATTTGATGCCATTCAATTTTGCATATATGAGCAACTCCGAATTGGTTATCGATTAACGgtatttatctcacttttatttaatgaatcca------atgtattgttcttgaatagttccgtgttcttttgaac-catcacg--ttctga-atactgat-tgttaattcag--------------------------
|| ||  | ||||| ||  |||||||| ||||||||||||| || || || |||||||||||||| ||  |  | || |||  |  | | |||  | |||   |   ||     | ||         ||||| | |  ||| |||       |        ||| ||| |    ||||||  ||||||| | ||   | ||                          
GGATACCGGTCCTTCCTTTTGCGAGATTTGCCATTTGATGCTATACAGTTCTGCATATATGAGCAGCTTTGCTTGGGGTATAAAAAAGCCgtaagtttctttgtaaaataagtggcatttcttctatatgtaatatctttggataaggtatcggaaaaaaaaacgcatgataacttctgatgtactgatattttgcatgagatttactttggtcaactctttggcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|5650195|gb|AI920555.1|AI920555
EST:     CCATTCAATTTTGCATATATGAGCAACTCCGAATTGGTTATCGATTAACG                         GCTAAGAGGGAGTTGCACGACCCAGAGACTGCAATTATTGGTGCTTTTGCT
genomic: CCATTCAATTTTGCATATATGAGCAACTCCGAATTGGTTATCGATTAACGgtatttatct ... gtggatccagGCTAAGAGGGAGTTGCACGACACAGAGACTGCAATTATTGGTGCTTTTGCT
EST: gi|60339440|gb|DN206413.1|DN206413
EST:     CCATTCAATTTTGCATATATGAGCAACTCCGAATTGGTTATCGATTAACG                         GCTAAGAGGGAGTTGCACGACACAGAGACTGCAATTATTGGTGCTTTTGCT
genomic: CCATTCAATTTTGCATATATGAGCAACTCCGAATTGGTTATCGATTAACGgtatttatct ... gtggatccagGCTAAGAGGGAGTTGCACGACACAGAGACTGCAATTATTGGTGCTTTTGCT
EST: gi|76280497|gb|DV020065.1|DV020065
EST:     CCATTCAATTTTGCATATATGAGCAACTCCGAATTGGTTATCGATTAACG                         GCTAAGAGGGAGTTGCACGACACAGAGACTGCAATTATTGGTGCTTTTGCT
genomic: CCATTCAATTTTGCATATATGAGCAACTCCGAATTGGTTATCGATTAACGgtatttatct ... gtggatccagGCTAAGAGGGAGTTGCACGACACAGAGACTGCAATTATTGGTGCTTTTGCT
EST: gi|89761076|gb|DY689235.1|DY689235
EST:     CAATTTTGCATATATGAGCAACTCCGAATTGGTTATCGATTAACG                         GCTAAGAGGGAGTTGCACGACACACAGACTGCAATTATTGGTGCTTTTGCT
genomic: CAATTTTGCATATATGAGCAACTCCGAATTGGTTATCGATTAACGgtatttatct ... gtggatccagGCTAAGAGGGAGTTGCACGACACAGAGACTGCAATTATTGGTGCTTTTGCT
EST: gi|50325534|gb|CO520660.1|CO520660
EST:     CCATTCAATTTTGCATATATGAGCAACTCCGAATTGGTTATCGATTAACG                         GCTAAGAGGGAGTTGCACGACACAGAGACTGCAATTATTGGTGCTTTTGCT
genomic: CCATTCAATTTTGCATATATGAGCAACTCCGAATTGGTTATCGATTAACGgtatttatct ... gtggatccagGCTAAGAGGGAGTTGCACGACACAGAGACTGCAATTATTGGTGCTTTTGCT