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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGTAGGAGAATCTGCGCTGTTCACTCCTGATGATATCTCGTTCGTTCAAAACGCTGGGGTCAAAGCGgtaagccatgagacacagatacctgtaaactgacaccaggctcaactgcgactcggtattcctttctcttcgtactgatatgactcctccgttgtgtctgttgtag

Basic information

species Zea mays
transcript GRMZM2G169516_T03
intron # 8
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15214479|gb|BI431015.1|BI431015
EST:     TGTTCACTCCTGGTGATATTTCGTTCGTTCAAAACGCTGGAGTCAAAGCG                         GTTCTCGTCGGGGAATCCCTCATCAAGCAGGAGGATCCAGGGAAAGCAATC
genomic: TGTTCACTCCTGATGATATCTCGTTCGTTCAAAACGCTGGGGTCAAAGCGgtaagccatg ... tctgttgtagGTTCTCGTCGGGGAATCCCTCATCAAGCAGGAGGATCCAGGGAAAGCAATC
EST: gi|211073093|gb|FL464915.1|FL464915
EST:     TGTTCACTCCTGATGATATCTCGTTCGTTCAAAACGCTGGGGTCAAAGCG                         GTTCTCGTCGGGGAATCCCTCATCAAGCAGGAGGATCCAGGGAAAGCAATC
genomic: TGTTCACTCCTGATGATATCTCGTTCGTTCAAAACGCTGGGGTCAAAGCGgtaagccatg ... tctgttgtagGTTCTCGTCGGGGAATCCCTCATCAAGCAGGAGGATCCAGGGAAAGCAATC
EST: gi|84969902|gb|DV170843.2|DV170843
EST:     TGTTCACTCCTGATGATATCTCGTTCGTTCAAAACGCTGGGGTCAAAGCG                         GTTCTCGTCGGGGAATCCCTCATCAAGCAGGAGGATCCAGGGAAAGCAATC
genomic: TGTTCACTCCTGATGATATCTCGTTCGTTCAAAACGCTGGGGTCAAAGCGgtaagccatg ... tctgttgtagGTTCTCGTCGGGGAATCCCTCATCAAGCAGGAGGATCCAGGGAAAGCAATC
EST: gi|78121834|gb|DV540218.1|DV540218
EST:     TGTTCACTCCTGATGATATTTCGTTCGTTCAAAACGCTGGGGTCAAAGCG                         GTTCTCGTCGGGGAATCCCTCATCAAGCAGGAGGATCCAGGGAAAGCAATC
genomic: TGTTCACTCCTGATGATATCTCGTTCGTTCAAAACGCTGGGGTCAAAGCGgtaagccatg ... tctgttgtagGTTCTCGTCGGGGAATCCCTCATCAAGCAGGAGGATCCAGGGAAAGCAATC
EST: gi|91870855|gb|EB401116.1|EB401116
EST:     TGTTCACTCCTGATGATATCTCGTTCGTTCAAAACGCTGGGGTCAAAGCG                         GTTTTCGTCGGGGAATCCCTCATCAAGCAGGAGGATCCAGGGAAAGCAATC
genomic: TGTTCACTCCTGATGATATCTCGTTCGTTCAAAACGCTGGGGTCAAAGCGgtaagccatg ... tctgttgtagGTTCTCGTCGGGGAATCCCTCATCAAGCAGGAGGATCCAGGGAAAGCAATC