Sequence
atgc intronic sequence ATGC exonic sequenceTGAACCTGACATGCTTGCCTTTTCTGGGTGCTATTATGGTGGTGGAGAAAAGGAGAGGAGAGAATTAGCTGCAATTCGCAGACGATGGAGAACCTTGCATgtacaagctgtgtgatgtgtaatcattactcgcttactgagatagaattaccttttgctaaaagttttcatattctag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G168614_T01 (Zea mays), 5'ss of exon 7
lower sequence: LOC_Os09g37590.1 (Oryza sativa), 5'ss of exon 11
TGAACCTGACATGCTTGCCTTTTCTGGGTGCTATTATGGTGGTGGAGAAAAGGAGAGGAGAGAATTAGCTGCAATTCGCAGACGATGGAGAACCTTGCATgtacaagctgtgtgatgtgtaatcattactcgcttactgagatagaattaccttttgctaaa--agttttcatattctag
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TGAACCTGACATGCTTGCCTTTTCTGGGTGTTATTATGGTGGTGGAGAAAAGGAGAAAAGAGAACTAGGCTCCATTCGCAAGCGATGGAAAACTTTGCATgtatgaacaatatcatgc--agcagatactttcgaagtgagctaaagtttcctgttaccaacttgtgttctacatttcag
upper sequence: GRMZM2G168614_T01 (Zea mays), 5'ss of exon 7
lower sequence: AT1G76270.1 (Arabidopsis thaliana), 5'ss of exon 7
TGAACCTGACATGCTTGCCTTTTCTGGGTGCTATTATGGTGGTGGAGAAAAGGAGAGGAGAGAATTAGCTGCAATTCGCAGACGATGGAGAACCTTGCATgtacaagctgtgtgatgtgtaatcattactcgcttac-tgagatagaat-taccttttgctaa-aagttttcatattctag-------------------
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TGAACCTGATATGCTTGCATTCTCGGGATGCTATTATGGTGGTGGTGATAAGGAAAGGAGAGAACTTGCAGCAATTAGAAGGAGATGGAAAACATTACATgtaatgcctattc--tgtataatgtttcagaaattacatgcgattcattgtactctatattaacaaggtaccgatgactaattttgcaattttattgcag
upper sequence: GRMZM2G168614_T01 (Zea mays), 5'ss of exon 7
lower sequence: Vv03s0038g03240.t01 (Vitis vinifera), 5'ss of exon 8
TGAACCTGACATGCTTGCCTTTTCTGGGTGCTATTATGGTGGTGGAGAAAAGGAGAGGAGAGAATTAGCTGCAATTCGCAGACGATGGAGAACCTTGCATgtacaagctgtgtgatgtgtaa------tcattactcgcttactg-agatagaattaccttttgctaaaagttttcatattctag----
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TGAACCTGATATGCTTGCATTCTCTGGATGCTATTATGGTGGAGGAGAAAAAGAAAGGACAGAACTGGGCGCATTAAGGAAGAGGTGGAAAACTTTACATgtg-aggctccatgagttttaagagatatcatgcaatgccaactatagataaagcatgctttgacacattcttttggaattttattcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|50322961|gb|CO518087.1|CO518087EST: AGGAGAGGAGAGAATTAGCTGCAATTCGCAGACGATGGAGAACCTTGCAT ATACGTGACCCGGAGAAAGGAAGACGGCAAGGCAGGTGTCCACTAACTCCT
genomic: AGGAGAGGAGAGAATTAGCTGCAATTCGCAGACGATGGAGAACCTTGCATgtacaagctg ... catattctagATACGTGACCCGGAGAAAGGAAGACGGCAAGGCAGGTGTCCACTAACTCCT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TGAACCTGACATGCTTGCCTTTTCTGGGTGCTATTATGGTGGTGGAGAAAAGGAGAGGAGAGAATTAGCTGCAATTCGCAGACGATGGAGAACCTTGCATgtacaagctgtgtgatgtgtaatcattactcgcttactgagatagaattaccttttgctaaaagttttcatattctag
- - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA