Sequence
atgc intronic sequence ATGC exonic sequenceCATCTCGCATGGCTGCAATCGATTTCATTGTCTGTGAGGAAAGTGATGCTTTTGTGGCTAACAACATTGGGAACATGGCCAAAATTCTGGCTGGGCAAAGgtaatgcatcttttgtaactgttcttatgcttaactgctgttaacttgttaactcaaccccccctctcctgatcatctatctctgcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G168614_T03 (Zea mays), 5'ss of exon 7
lower sequence: LOC_Os09g37590.1 (Oryza sativa), 5'ss of exon 12
CATCTCGCATGGCTGCAATCGATTTCATTGTCTGTGAGGAAAGTGATGCTTTTGTGGCTAACAACATTGGGAACATGGCCAAAATTCTGGCTGGGCAAAGgtaatgcatcttttgtaactgttcttatgcttaactgctgttaacttgttaactcaaccccccctctcctgatcatctatctctgcag
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CATCTCGCATGGCGGCAATTGATTTTATTGTTTGTGATGGAAGTGATGCTTTTGTAACTAACAACAACGGTAACATGGCCAAAATTCTTGTTGGGCGAAGgtgatgcatcagttctttccatttggatattttatttattttagttcatcgagct--ctaactatctactggtgctct----ctgcag
upper sequence: GRMZM2G168614_T03 (Zea mays), 5'ss of exon 7
lower sequence: GLYMA06G02110.1 (Glycine max), 5'ss of exon 8
CATCTCGCATGGCTGCAATCGATTTCATTGTCTGTGAGGAAAGTGATGCTTTTGTGGCTAACAACATTGGGAACATGGCCAAAATTCTGGCTGGGCAAAGgtaatgcatcttttgtaactgttcttatgcttaactgctgttaacttgttaactcaaccccccctctcctgatcatctatctctgcag
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CTTCTCGCATGGCTGCACTCGACTTCATTGTTTGTGATGAAAGCGATGTTTTTGTAACCAATAATAATGGAAATATGGCAAAAATATTAGCTGGACGAAGgta-tgtaccatttacatcttttatcttatttt-ctgttgatcact-gatatctatacctaattagctttcttggaactttcttgtag
upper sequence: GRMZM2G168614_T03 (Zea mays), 5'ss of exon 7
lower sequence: GLYMA04G02010.1 (Glycine max), 5'ss of exon 9
CATCTCGCATGGCTGCAATCGATTTCATTGTCTGTGAGGAAAGTGATGCTTTTGTGGCTAACAACATTGGGAACATGGCCAAAATTCTGGCTGGGCAAAGgtaatgcatcttttgtaactgt-tcttatgcttaactg--ctgttaacttgttaactcaaccccccctctcctgatcatctatctctgcag
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CTTCTCGCATGGCTGCACTCGACTTCATTGTTTGTGATGAAAGTGATGTTTTTGTAACCAATAATAATGGAAATATGGCAAAAATATTGGCTGGACGAAGgta-tgcaccatttacatctttattttattttctgttgaatcactgatatctatacctaattagctttctgggaactttct-----tgtag
upper sequence: GRMZM2G168614_T03 (Zea mays), 5'ss of exon 7
lower sequence: Vv18s0001g00100.t01 (Vitis vinifera), 5'ss of exon 9
CATCTCGCATGGCTGCAATCGATTTCATTGTCTGTGAGGAAAGTGATGCTTTTGTGGCTAACAACATTGGGAACATGGCCAAAATTCTGGCTGGGCAAAGgtaatgcatcttttgtaa-ctgttcttatgc-ttaactgctgttaacttgtt-aactcaaccccccctctcctgatcatctatctctgcag-----
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CTGCTCGCATGGCTGCACTTGACTTCATAGTTTGTGATGAAAGTGATGTATTTGTTACCAACAACAATGGAAACATGGCTAAAATATTAGCTGGGCGAAGgtatgctgttttttttgttctgtgcttgcaccttcaaccttgtcaaggaacagaattcaaactgcttatgaactttgacatgtctcttcattgcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|211219282|gb|FL379945.1|FL379945EST: TTTGTGGCTAACAACATTGGGAACATGGCCAAAATTCTGGCTGGGCAAAG GAGATATTTTGGACACAAGAGAACAATCCGGCCAAATGCTAAACAGCTCTA
genomic: TTTGTGGCTAACAACATTGGGAACATGGCCAAAATTCTGGCTGGGCAAAGgtaatgcatc ... atctctgcagGAGATATTTTGGACACAAGAGAACAATCCGGCCAAATGCTAAACAGCTCTA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CATCTCGCATGGCTGCAATCGATTTCATTGTCTGTGAGGAAAGTGATGCTTTTGTGGCTAACAACATTGGGAACATGGCCAAAATTCTGGCTGGGCAAAGgtaatgcatcttttgtaactgttcttatgcttaactgctgttaacttgttaactcaaccccccctctcctgatcatctatctctgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG