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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCTAGCGCCAAGTCTTACCCCTTGGGAGCACTAATGGATGACTGCAAGAGTTACTTCCTTGAAACTGGGCGCAGGGTATCCTTCGAGTACACTCTGCTAGgtatcagatgattctatctttttcaggagaaaatattactcatcgacagtactaacatggctagagtggatttcgtggccag

Basic information

species Zea mays
transcript GRMZM2G168412_T02
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G168412_T02 (Zea mays), 5'ss of exon 8
lower sequence: LOC_Os01g74190.1 (Oryza sativa), 5'ss of exon 8
CCTAGCGCCAAGTCTTACCCCTTGGGAGCACTAATGGATGACTGCAAGAGTTACTTCCTTGAAACTGGGCGCAGGGTATCCTTCGAGTACACTCTGCTAGgtat--------cagatgattctatctttttcaggagaa-aatatta---ctcatcgacagtactaacatggctagagtggatttcgtggccag
|| || || ||||| || |||||||  |||||||||||||||||||||| ||||||||| |||||||| || ||||||||||||||||||||||||||||||||            ||  || || |  || ||  ||| |||  ||   ||  |  ||   ||||||  | ||  | || ||| | |  ||||
CCAAGTGCAAAGTCATATCCCTTGGAGGCACTAATGGATGACTGCAAGAATTACTTCCTCGAAACTGGACGAAGGGTATCCTTCGAGTACACTCTGCTAGgtatgctcactatgcctggatccatgtgcttaagaggaataatgctaaagctgctttaccaaactaacgcgcctgaactgaattccct--ccag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|91878765|gb|EB408722.1|EB408722
EST:     TTACTTCCTTGAAACTGGGCGCAGGGTATCCTTCGAGTACACTCTGCTAG                         CTGGGATTAACGATGAAAAGGAGCATGCCGAAGAGCTAGCAGAACTACTTC
genomic: TTACTTCCTTGAAACTGGGCGCAGGGTATCCTTCGAGTACACTCTGCTAGgtatcagatg ... tcgtggccagCTGGGATTAACGATGAAAAGGAGCATGCCGAAGAGCTAGCAGAACTACTTC
EST: gi|71766718|gb|DR964655.1|DR964655
EST:     TTACTTCCTTGAAACTGGGCGCAGGGTATCCTTCGAGTACACTCTGCTAG                         CTGGGATTAACGATGAAAAGGAGCATGCCGAAGAGCTAGCAGAACTACTTC
genomic: TTACTTCCTTGAAACTGGGCGCAGGGTATCCTTCGAGTACACTCTGCTAGgtatcagatg ... tcgtggccagCTGGGATTAACGATGAAAAGGAGCATGCCGAAGAGCTAGCAGAACTACTTC
EST: gi|88747606|gb|DY531747.1|DY531747
EST:     TTACTTCCTTGAAACTGGGCGCAGGGTATCCTTCGAGTACACTTTGCTAG                         CTGGGATTAACGATGAAAAGGAGCATGCCGAAGAGCTAGCAGAACTACTTT
genomic: TTACTTCCTTGAAACTGGGCGCAGGGTATCCTTCGAGTACACTCTGCTAGgtatcagatg ... tcgtggccagCTGGGATTAACGATGAAAAGGAGCATGCCGAAGAGCTAGCAGAACTACTTC
EST: gi|13150086|gb|BG320408.1|BG320408
EST:     TTACTTCCTTGAAACTGGGCGCAGGGTATCCTTCGAGTACACTCTGCTAG                         CTGGGATTAACGATGAAAARGAGCATGCCGAA
genomic: TTACTTCCTTGAAACTGGGCGCAGGGTATCCTTCGAGTACACTCTGCTAGgtatcagatg ... tcgtggccagCTGGGATTAACGATGAAAAGGAGCATGCCGAA
EST: gi|13149611|gb|BG319933.1|BG319933
EST:     TTACTRCCTTGAAACTGGGCGCAGGGTATCCTTCGAGTACACTCTGCTAG                         CTGGGATTAACGATGAAAAGGAGCATGCCGAAGAGCTAGCAGAACTK-TTC
genomic: TTACTTCCTTGAAACTGGGCGCAGGGTATCCTTCGAGTACACTCTGCTAGgtatcagatg ... tcgtggccagCTGGGATTAACGATGAAAAGGAGCATGCCGAAGAGCTAGCAGAACTACTTC
EST: gi|78122643|gb|DV541027.1|DV541027
EST:     TTACTTCCTTGAAACTGGGCGCAGGGTATCCTTCGAGTACACTCTGCTAG                         CTGGGATTAACGATGAAAAGGAGCATGCCGAAGAGCTAGCAGAACTACTTC
genomic: TTACTTCCTTGAAACTGGGCGCAGGGTATCCTTCGAGTACACTCTGCTAGgtatcagatg ... tcgtggccagCTGGGATTAACGATGAAAAGGAGCATGCCGAAGAGCTAGCAGAACTACTTC
EST: gi|60345957|gb|DN212930.1|DN212930
EST:     TTACTTCCTTGAAACTGGGCGCAGGGTATCCTTCGAGTACACTCTGCTAG                         CTGGGATTAACGATGAAAAGGAGCATGCCGAAGAGCTAGCAGAACTACTTC
genomic: TTACTTCCTTGAAACTGGGCGCAGGGTATCCTTCGAGTACACTCTGCTAGgtatcagatg ... tcgtggccagCTGGGATTAACGATGAAAAGGAGCATGCCGAAGAGCTAGCAGAACTACTTC
EST: gi|71328602|gb|DR800966.1|DR800966
EST:     TTACTTCCTTGAAACTGGGCGCAGGGTATCCTTCGAGTACACTCTGCTAG                         CTGGGATTAACGATGAAAAGGAGCATGCCGAAGAGCTAGCAGAACTACTTC
genomic: TTACTTCCTTGAAACTGGGCGCAGGGTATCCTTCGAGTACACTCTGCTAGgtatcagatg ... tcgtggccagCTGGGATTAACGATGAAAAGGAGCATGCCGAAGAGCTAGCAGAACTACTTC
EST: gi|78118843|gb|DV537227.1|DV537227
EST:     TTACTTCCTTGAAACTGGGCGCAGGGTATCCTTCGAGTACACTCTGCTAG                         CTGGGATTAACGATGAAAAGGAGCATGCCGAAGAGCTAGCAGAACTACTTC
genomic: TTACTTCCTTGAAACTGGGCGCAGGGTATCCTTCGAGTACACTCTGCTAGgtatcagatg ... tcgtggccagCTGGGATTAACGATGAAAAGGAGCATGCCGAAGAGCTAGCAGAACTACTTC
EST: gi|76286139|gb|DV025707.1|DV025707
EST:     TTACTTCCTTGAAACTGGGCGCAGGGTATCCTTCGAGTACACTCTGCTAG                         CTGGGATTAACGATGAAAAGGAGCATGCCGAAGAGCTAGCAGAACTACTTC
genomic: TTACTTCCTTGAAACTGGGCGCAGGGTATCCTTCGAGTACACTCTGCTAGgtatcagatg ... tcgtggccagCTGGGATTAACGATGAAAAGGAGCATGCCGAAGAGCTAGCAGAACTACTTC
EST: gi|76015835|gb|DT943005.1|DT943005
EST:     TTACTTCCTTGAAACTGGGCGCAGGGTATCCTTCGAGTACACTCTGCTAG                         CTGGGATTAACGATGAAAAGGAGCATGCCGAAGAGCTAGCAGAACTACTTC
genomic: TTACTTCCTTGAAACTGGGCGCAGGGTATCCTTCGAGTACACTCTGCTAGgtatcagatg ... tcgtggccagCTGGGATTAACGATGAAAAGGAGCATGCCGAAGAGCTAGCAGAACTACTTC
EST: gi|78093019|gb|DV521393.1|DV521393
EST:     TTACTTCCTTGAAACTGGGCGCAGGGTATCCTTCGAGTACACTCTGCTAG                         CTGGGATTAACGATGAAAAGGAGCATGCCGAAGAGCTAGCAGAACTACTTC
genomic: TTACTTCCTTGAAACTGGGCGCAGGGTATCCTTCGAGTACACTCTGCTAGgtatcagatg ... tcgtggccagCTGGGATTAACGATGAAAAGGAGCATGCCGAAGAGCTAGCAGAACTACTTC