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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGTCCATACAATTATAGACAACTGCAGGAAATTATAACAAGCCGTTTAAAGGGTATTGATGCCTTTGAGGAACAGGCTATTGAATTTGCTTCTAGAAAGgtttgcctcacaataccatgtttttatgtttgctgtgtcatgtcttttcatccgtagctgttgctctctgcaccattccactaattctgaggttttctta...

Basic information

species Zea mays
transcript GRMZM2G168249_T03
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G168249_T03 (Zea mays), 5'ss of exon 8
lower sequence: LOC_Os06g08790.1 (Oryza sativa), 5'ss of exon 10
TGGTCCATACAATTATAGACAACTGCAGGAAATTATAACAAGCCGTTTAAAGGGTATTGATGCCTTTGAGGAACAGGCTATTGAATTTGCTTCTAGAAAGgtttgcctcacaataccatgtttttatgtttgctgtgtcatgtct---tttcatccgtagctgttgctctctgcaccattccactaattctgaggttttctta-
||| ||||| |||||| | ||||||||||| || || ||||||||| ||||||| |||||||||||||| || || |||||||||||||||||||||||||||||     || |  ||||| |  || ||| || |       |    | |  || ||  |||||||| | | || | |      |||| |    ||||| |  
TGGCCCATATAATTATCGGCAACTGCAGGAGATCATTACAAGCCGTCTAAAGGGCATTGATGCCTTTGAAGACCAAGCTATTGAATTTGCTTCTAGAAAGgtttggaatgcagtgtcatgtgtaaatcttttctattattcacccatgtcttttctgtgactgttgctttgtccatcctatttgcaatttt----ttttcctga
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32931679|gb|CF036491.1|CF036491
EST:     AGGGTATTGATGCCTTTGAGGAACAGGCTATTGAATTTGCTTCTAGAAAG                         GTAGCTGCTATGTCAGGTGATGCTAGGCGAGCTTTAGAGATTTGTAGACGG
genomic: AGGGTATTGATGCCTTTGAGGAACAGGCTATTGAATTTGCTTCTAGAAAGgtttgcctca ... ttgcttgtagGTAGCTGCTATGTCAGGTGATGCTAGGCGAGCTTTAGAGATTTGTAGACGG
EST: gi|15209030|gb|BI430914.1|BI430914
EST:     AGGGTATTGATGCCTTTGAGGAACAGGCTATTGAATTTGCTTCTAGAAAG                         GTAGCTGCTATGTCAGGTGATGCTAGGCGAGCTTTAGAGATTTGTAGACGG
genomic: AGGGTATTGATGCCTTTGAGGAACAGGCTATTGAATTTGCTTCTAGAAAGgtttgcctca ... ttgcttgtagGTAGCTGCTATGTCAGGTGATGCTAGGCGAGCTTTAGAGATTTGTAGACGG
EST: gi|15209031|gb|BI430915.1|BI430915
EST:     AGGGTATTGATGCCTTTGAGGAACAGGCTATTGAATTTGCTTCTAGAAAG                         GTAGCTGCTATGTCAGGTGATGCTAGGCGAGCTTTAGAGATTTGTAGACGG
genomic: AGGGTATTGATGCCTTTGAGGAACAGGCTATTGAATTTGCTTCTAGAAAGgtttgcctca ... ttgcttgtagGTAGCTGCTATGTCAGGTGATGCTAGGCGAGCTTTAGAGATTTGTAGACGG
EST: gi|60348765|gb|DN215738.1|DN215738
EST:     AGGGTATTGATGCCTTTGAGGAACAGGCTATTGAATTTGCTTCTAGAAAG                         GTAGCTGCTATGTCAGGTGATGCTAGGCGAGCTTTAGAGATTTGTAGACGG
genomic: AGGGTATTGATGCCTTTGAGGAACAGGCTATTGAATTTGCTTCTAGAAAGgtttgcctca ... ttgcttgtagGTAGCTGCTATGTCAGGTGATGCTAGGCGAGCTTTAGAGATTTGTAGACGG
EST: gi|60344624|gb|DN211597.1|DN211597
EST:     AGGGTATTGATGCCTTTGAGGAACAGGCTATTGAATTTGCTTCTAGAAAG                         GTAGCTGCTATGTCAGGTGATGCTAGGCGAGCTTTAGAGATTTGTAGACGG
genomic: AGGGTATTGATGCCTTTGAGGAACAGGCTATTGAATTTGCTTCTAGAAAGgtttgcctca ... ttgcttgtagGTAGCTGCTATGTCAGGTGATGCTAGGCGAGCTTTAGAGATTTGTAGACGG