1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GCTTCACCAATTGAAATAAATGGGCGGCAGATATATGTTGAGGAGAGGAAGCCAAATAGCGGAATAAGAGGTGGAAgtaagttcttgttttctgttgatacttgtgcgatatttgcattttcctggtattttcgccaactctttcctctaggaggtttatagtgctatcaaaaact...
species | Zea mays |
transcript | GRMZM2G167932_T01 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: GCAGATATATGTTGAGGAGAGGAAGCCAAATAGCGGAATAAGAGGTGGAA GGAGGGGAGGACGTGGCCGTTTCAGTGGTGGAGGCCGGGGATATTCGAGAGEST: gi|9952188|gb|BE638771.1|BE638771
genomic: GCAGATATATGTTGAGGAGAGGAAGCCAAATAGCGGAATAAGAGGTGGAAgtaagttctt ... gcattggcagGGAGGGGAGGACGTGGCCGTTTCAGTGGTGGAGGCCGGGGATATTCGAGAG
EST: GCAGATATATGTTGAGGAGAGGAAGCCAAATAGCGGAATAAGAGGTGGAA GGAGGGGAGGACGTGGCCGTTTCAGTGGTGGAGGCCGGGGATATTCGAGAGEST: gi|31354051|gb|CD438408.1|CD438408
genomic: GCAGATATATGTTGAGGAGAGGAAGCCAAATAGCGGAATAAGAGGTGGAAgtaagttctt ... gcattggcagGGAGGGGAGGACGTGGCCGTTTCAGTGGTGGAGGCCGGGGATATTCGAGAG
EST: GCAGATATATGTTGAGGAGAGGAAGCCAAATAGCGGAATAAGAGGTGGAA GGAGGGGAGGACGTGGCCGTTTCAGTGGTGGAGGCCGGGGATATTCGAGAGEST: gi|113660767|gb|DW819491.1|DW819491
genomic: GCAGATATATGTTGAGGAGAGGAAGCCAAATAGCGGAATAAGAGGTGGAAgtaagttctt ... gcattggcagGGAGGGGAGGACGTGGCCGTTTCAGTGGTGGAGGCCGGGGATATTCGAGAG
EST: CAGATATATGTTGAGGAGAGGAAGCCAAATAGCGGAATAAGAGGTGGAA GGAGGGGAGGACGTGGCCGTTTCAGTGGTGGAGGCCGGGGATATTCGAGAGEST: gi|22542391|gb|BU092829.1|BU092829
genomic: CAGATATATGTTGAGGAGAGGAAGCCAAATAGCGGAATAAGAGGTGGAAgtaagttctt ... gcattggcagGGAGGGGAGGACGTGGCCGTTTCAGTGGTGGAGGCCGGGGATATTCGAGAG
EST: GCAGATATATGTTGAGGAGAGGAAGCCAAATAGCGGAATAAGAGGTGGAA GGAGGGGAGGACGTGGCCGTTTTAGTGGTGGAGGCCGGGGATATTTGAGAGEST: gi|32808337|gb|CD960571.1|CD960571
genomic: GCAGATATATGTTGAGGAGAGGAAGCCAAATAGCGGAATAAGAGGTGGAAgtaagttctt ... gcattggcagGGAGGGGAGGACGTGGCCGTTTCAGTGGTGGAGGCCGGGGATATTCGAGAG
EST: GCAGATATATGTTGAGGAGAGGAAGCCAAATAGCGGAATAAGAGGTGGAA GGAGGGGAGGACGTGGCCGTTTCAGTGGTGGAGGCCGGGGATATTCGAGAGEST: gi|8367891|gb|BE050836.1|BE050836
genomic: GCAGATATATGTTGAGGAGAGGAAGCCAAATAGCGGAATAAGAGGTGGAAgtaagttctt ... gcattggcagGGAGGGGAGGACGTGGCCGTTTCAGTGGTGGAGGCCGGGGATATTCGAGAG
EST: GCAGATATATGTTGAGGAGAGGAAGCCAAATAGCGGAATAAGAGGTGGAA GGAGGGGAGGACGTGGCCGTTTCAGTGGTGGAGGCCGGGGATATTCGAGAGEST: gi|32847652|gb|CD987333.1|CD987333
genomic: GCAGATATATGTTGAGGAGAGGAAGCCAAATAGCGGAATAAGAGGTGGAAgtaagttctt ... gcattggcagGGAGGGGAGGACGTGGCCGTTTCAGTGGTGGAGGCCGGGGATATTCGAGAG
EST: GCAGATATATGTTGAGGAGAGGAAGCCAAATAGCGGAATAAGAGGTGGAA GGAGGGGAGGACGTGGCCGTTTCAGTGGTGGAGGCCGGGGATATTCGAGAG
genomic: GCAGATATATGTTGAGGAGAGGAAGCCAAATAGCGGAATAAGAGGTGGAAgtaagttctt ... gcattggcagGGAGGGGAGGACGTGGCCGTTTCAGTGGTGGAGGCCGGGGATATTCGAGAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCTTCACCAATTGAAATAAATGGGCGGCAGATATATGTTGAGGAGAGGAAGCCAAATAGCGGAATAAGAGGTGGAAgtaagttcttgttttctgttgatacttgtgcgatatttgcattttcctggtattttcgccaactctttcctctaggaggtttatagtgctatcaaaaact
- - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA