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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTTCTAGTGGAACAATTGTCAAAGGTTAATCCTAGCTGTATGGATCGCGATCAGCGGCTAGCCTTTTGGATTAACTTATACAATGCTTTGATAATGCATgtaagtatgacctggttacttaagatgctggcatcgcagacaaggacaatgattaaatttctgtctataattggaaacaggagctcacttcaattcatcgcatctgccctcaatttctttcatcaagtgtcatgcgctcaccaattgtttaccgttgcatttttttatcggaatctatcag

Basic information

species Zea mays
transcript GRMZM2G165945_T01
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G165945_T01 (Zea mays), 5'ss of exon 8
lower sequence: LOC_Os02g05900.1 (Oryza sativa), 5'ss of exon 4
ATTTCTAGTGGAACAATTGTCAAAGGTTAATCCTAGCTGTATGGATCGCGATCAGCGGCTAGCCTTTTGGATTAACTTATACAATGCTTTGATAATGCATgtaagtatgacctggttacttaagatgctggcatcgcagacaaggacaatgattaaatttctgtctataattggaaacaggagctcac-ttcaattcatcgcatctgccctcaatttctttcatcaagtgtcatgcgctcaccaattgtttaccgttgcatttttttatcggaatctatcag
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ATTTCTTGTGGAACAGCTATCAAAGGTTAACCCTAATAGTATGAACTGTGATGAGCGGCTAGCCTTTTGGATTAATTTGTACAATGCACTGATTATGCATgtaagtatg------ttaccaaagagactggctttgcaaacaagtcctgc-actgatgatttatgcatattt-----ctgttcctcatatttcatt--ttgcttttactacgtatttctttc--------tcactag---actaatactatatactaaattttctgtactggtttctatcag