1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
CTCTTCAAATGTCTGTCCAGGATGCAAACATGTCCAGTGACACTGATATGAGTAAGGTGTTTGAAGACAGAACGTTTGTGTCATCTATCCTTAATTCGgtatgtattattattaaactaatgacatacatgtacatttttagccgttgctttattaatttattggaccttttttatgtgtgaaataatag
species | Zea mays |
transcript | GRMZM2G165926_T01 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: TGAGTAAGGTGTTTGAAGACAGAACGTTTGTGTCATCTATCCTTAATTCG CTTCCTGGTGTTGATCCCAATGATCCATCTGTTAAAGATTTGCTGGCATCGEST: gi|33097806|gb|CF057766.1|CF057766
genomic: TGAGTAAGGTGTTTGAAGACAGAACGTTTGTGTCATCTATCCTTAATTCGgtatgtatta ... gaaataatagCTTCCTGGTGTTGATCCCAATGATCCATCTGTTAAAGATTTGCTGGCATCG
EST: AGAACGTTTGTGTCATCTATCCTTAATTCG CTTCCTGGTGTTGATCCCAATGATCCATCTGTTAAAGATTTGCTGGCATCGEST: gi|37383796|gb|CF628931.1|CF628931
genomic: AGAACGTTTGTGTCATCTATCCTTAATTCGgtatgtatta ... gaaataatagCTTCCTGGTGTTGATCCCAATGATCCATCTGTTAAAGATTTGCTGGCATCG
EST: TGAGTAAGGTGTTTGAAGACAGAACGTTTGTGTCATCTATCCTTAATTCG CTTCCTGGTGTTGATCCCAATGATCCATCTGTTAAAGATTTGCTGGCATCG
genomic: TGAGTAAGGTGTTTGAAGACAGAACGTTTGTGTCATCTATCCTTAATTCGgtatgtatta ... gaaataatagCTTCCTGGTGTTGATCCCAATGATCCATCTGTTAAAGATTTGCTGGCATCG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTCTTCAAATGTCTGTCCAGGATGCAAACATGTCCAGTGACACTGATATGAGTAAGGTGTTTGAAGACAGAACGTTTGTGTCATCTATCCTTAATTCGgtatgtattattattaaactaatgacatacatgtacatttttagccgttgctttattaatttattggaccttttttatgtgtgaaataatag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA