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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TACCATTGAACAGCTTGTTCCAATTTTCCTCTCTTTGTTGAAAGACGAATTTCCTGATGTTCGACTTAACATAATCAGCAAACTTGATCAAGTTAATCAGgtcagtaccattttttttgttattagatttatttgccttttcctttctgttttagatttttaatgtaatcttttataagctagctagccattagtatgctagatttttttaagttgatgtccttgaaagccttgcctttctcttcaaaattatctgatgattgctgatttttgttttgatctttcag

Basic information

species Zea mays
transcript GRMZM2G164352_T04
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G164352_T04 (Zea mays), 5'ss of exon 8
lower sequence: GLYMA07G10000.1 (Glycine max), 5'ss of exon 7
TACCATTGAACAGCTTGTTCCAATTTTCCTCTCTTTGTTGAAAGACGAATTTCCTGATGTTCGACTTAACATAATCAGCAAACTTGATCAAGTTAATCAGgtcagtaccattttttttgttattagatttatttgccttttcctttctgttttagatttttaatgtaatcttttataagctagctagccattagtatgctagatttttttaagttgatgtccttgaaagccttgcctttctcttcaaaattatctgatgattgctgatttttgttttgatctttcag
||| ||||| || ||| | || |||||||| ||| | ||||||||||| |||||||||||  | || || || |||||||| ||||||||||| || |||||  ||  | |    ||   ||||   |    ||| |    | | |   ||| | |     | | | || ||| ||| |||  ||  | |||   | |||     |||  |  | |||  |                                                                  
TACAATTGAGCAACTTCTGCCTATTTTCCTTTCTCTTTTGAAAGACGAGTTTCCTGATGTCAGGCTAAATATTATCAGCAAGCTTGATCAAGTGAACCAGgtttgtggcttaaaattgaatattccttcagattgac----catgtacatttcaaac----attattatttttcatatgctccct--ctattg--aagcttatgatttacacatggattgcag----------------------------------------------------------------

upper sequence: GRMZM2G164352_T04 (Zea mays), 5'ss of exon 8
lower sequence: GLYMA02G10790.2 (Glycine max), 5'ss of exon 8
TACCATTGAACAGCTTGTTCCAATTTTCCTCTCTTTGTTGAAAGACGAATTTCCTGATGTTCGACTTAACATAATCAGCAAACTTGATCAAGTTAATCAGgtcagtaccattttttttgttattagatttatttgccttttcctttctgttttagatttttaatgtaatcttttataagctagctagccattagtatgctagatttttttaagttgatgtccttgaaagccttgcctttctcttcaaaattatctgatgattgctgatttttgttttgatctttcag
 || ||||| |||||| |||| ||||| |||||  | ||||| || |||||||||||||| || || || || || ||||| ||||||||||| ||||||||  |||  |  ||||  ||  ||   | |||||||   || ||||      || | |||  |     |  |||      |   |  |  |    |||||     || |                                                                              
AACAATTGAGCAGCTTCTTCCTATTTTTCTCTCCCTTTTGAAGGATGAATTTCCTGATGTACGCCTAAATATCATAAGCAAGCTTGATCAAGTGAATCAGgtttgtag-agcttttgagtggtt---tctatttgcaaattgcttta-----taaactttcgacaaccttgtttcctttttgtttttctctggtaatgctgttaattct------------------------------------------------------------------------------

upper sequence: GRMZM2G164352_T04 (Zea mays), 5'ss of exon 8
lower sequence: GLYMA20G24790.1 (Glycine max), 5'ss of exon 8
TACCATTGAACAGCTTGTTCCAATTTTCCTCTCTTTGTTGAAAGACGAATTTCCTGATGTTCGACTTAACATAATCAGCAAACTTGATCAAGTTAATCAGgtcagtaccattttttttgttattagatttatttgccttttcctttctgttttagatttttaatgtaatcttttataagctagctagccattagtatgctagatttttttaagttgatgtccttgaaagccttgcctttctcttcaaaattatctgatgattgctgatttttgttttgatctttcag
 || ||||| |||||| |||| |||||||| ||  | ||||| || ||||||||||| || || || ||||| |||||||| ||||||||||| ||||||||   |   || |||| ||| ||||  || ||||        ||   || ||||||||| |  ||  | | ||| |    |  ||  |   |  |||  |  ||| |   |                                                                            
AACAATTGAGCAGCTTCTTCCTATTTTCCTTTCCCTTTTGAAGGATGAATTTCCTGACGTACGCCTAAACATTATCAGCAAGCTTGATCAAGTGAATCAGgt---tgttatattttctgtaattaatttaattt-------tctgaatgctttagatttcttttggcaacctttgttccttttct--ctgctgatataattaattctagcat---------------------------------------------------------------------------

upper sequence: GRMZM2G164352_T04 (Zea mays), 5'ss of exon 8
lower sequence: GLYMA10G42250.1 (Glycine max), 5'ss of exon 8
TACCATTGAACAGCTTGTTCCAATTTTCCTCTCTTTGTTGAAAGACGAATTTCCTGATGTTCGACTTAACATAATCAGCAAACTTGATCAAGTTAATCAGgtcagtaccattttttttgttattagatttatttgccttttcctttctgttttagatttttaatgtaatcttttataagctagctagccattagtatgctagatttttttaagttgatgtccttgaaagccttgcctttctcttcaaaattatctgatgattgctgatttttgttttgatctttcag
 || ||||| |||||| |||| |||||||| ||  | ||||| || |||||||| || || || || ||||| |||||||| ||||||||||| ||||||||   ||   ||| | | ||||    ||||| ||      | |    || ||||||||| |  ||  | | |||      |  ||  |   |  |||  |  |||     |                                                                            
AACAATTGAGCAGCTTCTTCCTATTTTCCTTTCCCTTTTGAAGGATGAATTTCCCGACGTGCGCCTAAACATTATCAGCAAGCTTGATCAAGTGAATCAGgttgttatagtttctgtagtta----atttaatt------ttcagaatgctttagatttcttttggcaaccttttctcctttcct--ctgctgatataattaattcgagcat---------------------------------------------------------------------------

upper sequence: GRMZM2G164352_T04 (Zea mays), 5'ss of exon 8
lower sequence: GLYMA09G31760.1 (Glycine max), 5'ss of exon 8
TACCATTGAACAGCTTGTTCCAATTTTCCTCTCTTTGTTGAAAGACGAATTTCCTGATGTTCGACTTAACATAATCAGCAAACTTGATCAAGTTAATCAGgtcagtaccattttttttgttattagatttatttgccttttcctttctgttttagatttttaatgtaatcttttataagctagctagccattagtatgctagatttttttaagttgatgtccttgaaagccttgcctttctcttcaaaattatctgatgattgctgatttttgttttgatctttcag
 || || || || ||| | || |||||||| ||| | ||||||||||| |||||||||||  | || || || |||||||| ||||||||||| || |||||  ||  | |    ||   ||||   |    ||| |    | | |   ||| | |     |   | || ||| ||| |||  ||       ||  ||  |  |     | | |||  |                                                                    
CACAATCGAGCAACTTCTGCCTATTTTCCTTTCTCTTTTGAAAGACGAGTTTCCTGATGTCAGGCTAAATATTATCAGCAAGCTTGATCAAGTGAACCAGgtttgtggcttaaaattgaatattcattcaggttgac----cgtgtacatttcaaac----acaattatttttcatatgctccctctattgaagcttgtgatttacacatgaattgcag--------------------------------------------------------------------

upper sequence: GRMZM2G164352_T04 (Zea mays), 5'ss of exon 8
lower sequence: AT1G25490.1 (Arabidopsis thaliana), 5'ss of exon 8
TACCATTGAACAGCTTGTTCCAATTTTCCTCTCTTTGTTGAAAGACGAATTTCCTGATGTTCGACTTAACATAATCAGCAAACTTGATCAAGTTAATCAGgtcagtaccattttttttgt-tattagatttatttgcctt-ttcctttctgttttagatttttaatgtaatcttttataagctagctagccattagtatgctagatttttttaagttgatgtccttgaaagccttgcctttctcttcaaaattatctgatgattgctgatttttgttttgatctttcag
 |||||||| || ||  | |||||||| || ||  | |||||||| |||||||||||||| || |||||||| || |||||  | |||||||| || |||||  ||  ||| | | |||| |  |  |  || |    || || ||| ||  ||||| |  | | || | | | || || |  ||                                                                                                        
AACCATTGAGCATCTGTTACCAATTTTTCTTTCCCTTTTGAAAGATGAATTTCCTGATGTGCGCCTTAACATCATAAGCAAGTTAGATCAAGTCAACCAGgtttgttgcatctctcttgtgtgctttagatactacttttattgcttccttatttagttggtgactgaattatcttttacggcag--------------------------------------------------------------------------------------------------------

upper sequence: GRMZM2G164352_T04 (Zea mays), 5'ss of exon 8
lower sequence: AT1G13320.2 (Arabidopsis thaliana), 5'ss of exon 8
TACCATTGAACAGCTTGTTCCAATTTTCCTCTCTTTGTTGAAAGACGAATTTCCTGATGTTCGACTTAACATAATCAGCAAACTTGATCAAGTTAATCAGgtcagtaccattttttttgttattagatttatttgccttttcctttctgttttagatttttaatgtaatcttttataagctagctagccattagtatgctagatttttttaagttgatgtc--cttgaaagccttgcctttctcttcaaaattatc-tgatgatt-gctgatttttgttttgatctttcag
 || ||||| || ||| ||||||| || || ||| | ||||||||||||||||||||||| ||  | ||||| |||||||||||||| ||||| || |||||           ||  | ||     | ||| |   || ||  |  |    || | ||| || | |  ||    ||   | |   |||  | |  ||| |    ||  | ||||  ||| |  ||||| |||     |||| ||     | || || | |||||| | |  |||||  ||  |  |  |||
AACAATTGAGCATCTTCTTCCAATCTTTCTTTCTCTATTGAAAGACGAATTTCCTGATGTACGCTTAAACATTATCAGCAAACTTGACCAAGTGAACCAGgt-----------ttgctattgaccaagttactcatctctttgta-cgacattgggtttcta-ttttttcccacatgttcaaaggagctgt-atcatgtt----ttggtcaagtcaatgactacttgacagcaaattctttgtccatccatttttcataatgattcgattttttttccttaaaattgccag

upper sequence: GRMZM2G164352_T04 (Zea mays), 5'ss of exon 8
lower sequence: Vv01s0011g03280.t01 (Vitis vinifera), 5'ss of exon 7
TACCATTGAACAGCTTGTTCCAATTTTCCTCTCTTTGTTGAAAGACGAATTTCCTGATGTTCGACTTAACATAATCAGCAAACTTGATCAAGTTAATCAGgtcagtaccattttttttgttattagatttatttgccttttcctttctgttttagatttttaatgtaatcttttataagctagctagccattagtatgctagatttttttaagttgatgtccttgaaagccttgcctttctcttcaaaattatctgatgattgctgatttttgttttgatctttcag
 || ||||| || ||| |||||||||| || ||| | ||||| || || ||||||||||| ||||| || || || ||||| ||||||||| | ||||||||   |  |||  |||  |   ||  |   ||  ||||||   |||   |||||  |  |     || |  |       ||||| ||| |||      |||  |||||| ||    || |                                                                   
AACAATTGATCAACTTCTTCCAATTTTTCTTTCTCTTTTGAAGGATGACTTTCCTGATGTACGACTAAATATCATTAGCAAGCTTGATCAAATAAATCAGgtt--tgtcataatttaaggagtttca--catcagccttt---ttttaattttatgtgctctgcctacttgt-------ctagccagctatt------ctactttttttaaatgcaattt-------------------------------------------------------------------

upper sequence: GRMZM2G164352_T04 (Zea mays), 5'ss of exon 8
lower sequence: Vv17s0000g03870.t01 (Vitis vinifera), 5'ss of exon 9
TACCATTGAACAGCTTGTTCCAATTTTCCTCTCTTTGTTGAAAGACGAATTTCCTGATGTTCGACTTAACATAATCAGCAAACTTGATCAAGTTAATCAGgtcagtaccatttttt-ttgttattagatttatttgccttttcctttctgttttagatttttaatgtaatcttttataagctagctagccattagtatgctagatttttttaagttgatgtccttgaaagccttgcctttctcttcaaaattatctgatgattgctgatttttgttttgatctttcag
 || || || || ||| | || |||||||| ||| || | ||||| || ||||||||||| ||||| || || |||||||| ||||||||||| || |||||  ||   |||||   |||| |||   |   |||   || | |    || ||       |  |||     || | | ||    | |   ||||  | ||                                                                                        
AACAATAGATCAACTTCTGCCCATTTTCCTTTCTCTGCTTAAAGATGAGTTTCCTGATGTCCGACTGAATATTATCAGCAAGCTTGATCAAGTAAACCAGgtttgtctgattttccattgtcatttcttggttttcatttgttccagttggttagagaggtagatggttggttctgttaga-gaccacttattaaaaggca---------------------------------------------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|87156353|gb|DY401142.1|DY401142
EST:     TTCCTGATGTTCGACTTAACATAATCAGCAAACTTGATCAAGTTAATCAG                         GTTATTGGAATTGACTTGCTATCTCAATCACTGCTACCAGCAATTGTAGAA
genomic: TTCCTGATGTTCGACTTAACATAATCAGCAAACTTGATCAAGTTAATCAGgtcagtacca ... gatctttcagGTTATTGGAATTGACTTGCTATCTCAATCACTGCTACCAGCAATTGTAGAA
EST: gi|67016540|gb|CO445289.1|CO445289
EST:     TTCCTGATGTTCGACTTAACATAATCAGCAAACTTGATCAAGTTAATCAG                         GTTATTGGAATTGACTTGCTATCTCAATCACTGCTACCAGCAATTGTAGAA
genomic: TTCCTGATGTTCGACTTAACATAATCAGCAAACTTGATCAAGTTAATCAGgtcagtacca ... gatctttcagGTTATTGGAATTGACTTGCTATCTCAATCACTGCTACCAGCAATTGTAGAA
EST: gi|87157118|gb|DY401907.1|DY401907
EST:     TTCCTGATGTTCGACTTAACATAATCAGCAAACTTGATCAAGTTAATCAG                         GTTATTGGAATTGACTTGCTATCTCAATCACTGCTACCAGCAATTGTAGAA
genomic: TTCCTGATGTTCGACTTAACATAATCAGCAAACTTGATCAAGTTAATCAGgtcagtacca ... gatctttcagGTTATTGGAATTGACTTGCTATCTCAATCACTGCTACCAGCAATTGTAGAA
EST: gi|31362531|gb|CD446888.1|CD446888
EST:     CTGATGTTCGACTTAACATAATCAGCAAACTTGATCAAGTTAATCAG                         GTTATTGGAATTGACTTGCTATCTCAATCACTGCTACCAGCAATTGTAGAA
genomic: CTGATGTTCGACTTAACATAATCAGCAAACTTGATCAAGTTAATCAGgtcagtacca ... gatctttcagGTTATTGGAATTGACTTGCTATCTCAATCACTGCTACCAGCAATTGTAGAA
EST: gi|26558526|gb|CA830761.1|CA830761
EST:     TTCCTGATGTTCGACTTAACATAATCAGCAAACTTGATCAAGTTAATCAG                         GTTATTGGAATTGACTTGCTATCTCAATCACTGCTACCAGCAATTGTAGAA
genomic: TTCCTGATGTTCGACTTAACATAATCAGCAAACTTGATCAAGTTAATCAGgtcagtacca ... gatctttcagGTTATTGGAATTGACTTGCTATCTCAATCACTGCTACCAGCAATTGTAGAA
EST: gi|67017790|gb|CO446539.1|CO446539
EST:     TTCCTGATGTTCGACTTAACATAATCAGCAAACTTGATCAAGTTAATCAG                         GTTATTGGAATTGACTTGCTATCTCAATCACTGCTACCAGCAATTGTAGAA
genomic: TTCCTGATGTTCGACTTAACATAATCAGCAAACTTGATCAAGTTAATCAGgtcagtacca ... gatctttcagGTTATTGGAATTGACTTGCTATCTCAATCACTGCTACCAGCAATTGTAGAA
EST: gi|32933390|gb|CF038202.1|CF038202
EST:     TTCCTGATGTTCGACTTAACATAATCAGCAAACTTGATCAAGTTAATCAG                         GTTATTGGAATTGACTTGCTATCTCAATCACTGCTACCAGCAATTGTAGAA
genomic: TTCCTGATGTTCGACTTAACATAATCAGCAAACTTGATCAAGTTAATCAGgtcagtacca ... gatctttcagGTTATTGGAATTGACTTGCTATCTCAATCACTGCTACCAGCAATTGTAGAA
EST: gi|22546073|gb|BU098394.1|BU098394
EST:     TTCCTGATGTTCGACTTAACATAATCAGCAAACTTGATCAAGTTAATCAG                         GTTATTGGAATTGACTTGCTATCTCAATCACTGCTACCAGCAATTGTAGAA
genomic: TTCCTGATGTTCGACTTAACATAATCAGCAAACTTGATCAAGTTAATCAGgtcagtacca ... gatctttcagGTTATTGGAATTGACTTGCTATCTCAATCACTGCTACCAGCAATTGTAGAA
EST: gi|42491785|gb|CK700831.1|CK700831
EST:     TTCCTGATGTTCGACTTAACATAATCAGCAAACTTGATCAAGTTAATCAG                         GTTATTGGAATTGACTTGCTATCTCAATCACTGCTACCAGCAATTGTAGAA
genomic: TTCCTGATGTTCGACTTAACATAATCAGCAAACTTGATCAAGTTAATCAGgtcagtacca ... gatctttcagGTTATTGGAATTGACTTGCTATCTCAATCACTGCTACCAGCAATTGTAGAA
EST: gi|23357737|gb|BU645386.1|BU645386
EST:     TTCCTGATGTTCGACTTAACATAATCAGCAAACTTGATCAAGTTAATCAG                         GTTATTGGAATTGACTTGCTATCTCAATCACTGCTACCAGCAATTGTAGAA
genomic: TTCCTGATGTTCGACTTAACATAATCAGCAAACTTGATCAAGTTAATCAGgtcagtacca ... gatctttcagGTTATTGGAATTGACTTGCTATCTCAATCACTGCTACCAGCAATTGTAGAA
EST: gi|67022121|gb|CO450870.1|CO450870
EST:     TTCCTGATGTTCGACTTAACATAATCAGCAAACTTGATCAAGTTAATCAG                         GTTATTGGAATTGACTTGCTATCTCAATCACTGCTACCAGCAATTGTAGAA
genomic: TTCCTGATGTTCGACTTAACATAATCAGCAAACTTGATCAAGTTAATCAGgtcagtacca ... gatctttcagGTTATTGGAATTGACTTGCTATCTCAATCACTGCTACCAGCAATTGTAGAA
EST: gi|211315613|gb|FL415838.1|FL415838
EST:     TTCCTGATGTTCGACTTAACATAATCAGCAAACTTGATCARGTTAATCAG                         GTTATTGGAATTGACTTGCTATCTCAATCACTGCTACCAGCAATTGTAGAA
genomic: TTCCTGATGTTCGACTTAACATAATCAGCAAACTTGATCAAGTTAATCAGgtcagtacca ... gatctttcagGTTATTGGAATTGACTTGCTATCTCAATCACTGCTACCAGCAATTGTAGAA
EST: gi|26560084|gb|CA832319.1|CA832319
EST:     TTCCTGATGTTCGACTTAACATAATCAGCAAACTTGATCAAGTTAATCAG                         GTTATTGGAATTGACTTGCTATCTCAATCACTGCTACCAGCAATTGTAGAA
genomic: TTCCTGATGTTCGACTTAACATAATCAGCAAACTTGATCAAGTTAATCAGgtcagtacca ... gatctttcagGTTATTGGAATTGACTTGCTATCTCAATCACTGCTACCAGCAATTGTAGAA
EST: gi|67039515|gb|CO465770.1|CO465770
EST:     TTCCTGATGTTCGACTTAACATAATCAGCAAACTTGATCAAGTTAATCAG                         GTTATTGGAATTGACTTGCTATCTCAATCACTGCTACCAGCAATTGTAGAA
genomic: TTCCTGATGTTCGACTTAACATAATCAGCAAACTTGATCAAGTTAATCAGgtcagtacca ... gatctttcagGTTATTGGAATTGACTTGCTATCTCAATCACTGCTACCAGCAATTGTAGAA
EST: gi|31355734|gb|CD440091.1|CD440091
EST:     TTCCTGATGTTCGACTTAACATAATCAGCAAACTTGATCAAGTTAATCAG                         GTTATTGGAATTGACTTGCTATCTCAATCACTGCTACCAGCAATTGTAGAA
genomic: TTCCTGATGTTCGACTTAACATAATCAGCAAACTTGATCAAGTTAATCAGgtcagtacca ... gatctttcagGTTATTGGAATTGACTTGCTATCTCAATCACTGCTACCAGCAATTGTAGAA
EST: gi|13315895|gb|BG410243.1|BG410243
EST:     TTCCTGATGTTCGACTTAACATAATCAGCAAACTTGATCAAGTTAATCAG                         GTTATTGGAATTGACTTGCTATCTCAATCACTGCTACCAGCAATTGTAGAA
genomic: TTCCTGATGTTCGACTTAACATAATCAGCAAACTTGATCAAGTTAATCAGgtcagtacca ... gatctttcagGTTATTGGAATTGACTTGCTATCTCAATCACTGCTACCAGCAATTGTAGAA