1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
GTTTGTGCATGGTGATGTGAAACCAGAGAATTTTCTGCTTGGTCAGCCTGGATCGCCTGACGATAAGAAACTTTACCTTATAGATCTCGGTTTAGgtatgcatttgtcaaatagtttttatctatgtattttactattccatatcactgtagtttctttgaaactatttatattttcttagtgctattttcccacttgcctcccccctttgttgttgttgttgttgatatgtggtacccaaattgtacag
species | Zea mays |
transcript | GRMZM2G164265_T01 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: GCCTGGATCGCCTGACGATAAGAAACTTTATCTTATCGATCTCGGTTTAG CATCCAAGTGGAAAGAGAATAATGGTCATCATGTTGATTATGATCAACGGCEST: gi|9952315|gb|BE638898.1|BE638898
genomic: GCCTGGATCGCCTGACGATAAGAAACTTTACCTTATAGATCTCGGTTTAGgtatgcattt ... aattgtacagCATCCAAGTGGAAAGAGAATAATGGTCATCATGTTGATTATGATCAACGGC
EST: GCCTGGATCGCCTGACGATAAGAAACTTTATCTTATCGATCTCGGTTTAG CATCCAAGTGGAAAGAGAATAATGGTCATCATEST: gi|18654924|gb|BM499729.1|BM499729
genomic: GCCTGGATCGCCTGACGATAAGAAACTTTACCTTATAGATCTCGGTTTAGgtatgcattt ... aattgtacagCATCCAAGTGGAAAGAGAATAATGGTCATCAT
EST: GCCTGGATCGCCTGACGATAAGAAACTTTATCTTATCGATCTCGGTTTAG CATCCA-GTGGAAAGAGAATAATGGTCATCATEST: gi|18661950|gb|BM501665.1|BM501665
genomic: GCCTGGATCGCCTGACGATAAGAAACTTTACCTTATAGATCTCGGTTTAGgtatgcattt ... aattgtacagCATCCAAGTGGAAAGAGAATAATGGTCATCAT
EST: GCCTGGATCGCC-GACGATAAGAAACTTTATCTTATCGATCTCGGTTTAG CATCCNAGTGGAAAGAGAATAATGGTCATCATGTTEST: gi|7145135|gb|AW506616.1|AW506616
genomic: GCCTGGATCGCCTGACGATAAGAAACTTTACCTTATAGATCTCGGTTTAGgtatgcattt ... aattgtacagCATCCAAGTGGAAAGAGAATAATGGTCATCATGTT
EST: GCCTGGATCGCCTGACGATAAGAAACTTTATCTTATCGATCTCGGTTTAG CATCCAAGTGGAAAGAGAATAATGGTCATCATGTTGATTATGATCAACGGCEST: gi|71430775|gb|DR811825.1|DR811825
genomic: GCCTGGATCGCCTGACGATAAGAAACTTTACCTTATAGATCTCGGTTTAGgtatgcattt ... aattgtacagCATCCAAGTGGAAAGAGAATAATGGTCATCATGTTGATTATGATCAACGGC
EST: GCCTGGATCGCCTGACGATAAGAAACTTTACCTTATAGATCTCGGTTTAG CATCCAAGTGGAAAGAGAATAATGGTCATCATGTTGATTATGATCAACGGCEST: gi|67043197|gb|CO469452.1|CO469452
genomic: GCCTGGATCGCCTGACGATAAGAAACTTTACCTTATAGATCTCGGTTTAGgtatgcattt ... aattgtacagCATCCAAGTGGAAAGAGAATAATGGTCATCATGTTGATTATGATCAACGGC
EST: GCCTGGATCGCCTGACGATAAGAAACTTTATCTTACCGATCTCGGTTTAG CATCCAAGTGGAAAGAGAATAATGGTCATCATGTTGATTATGATCAACGGC
genomic: GCCTGGATCGCCTGACGATAAGAAACTTTACCTTATAGATCTCGGTTTAGgtatgcattt ... aattgtacagCATCCAAGTGGAAAGAGAATAATGGTCATCATGTTGATTATGATCAACGGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTTGTGCATGGTGATGTGAAACCAGAGAATTTTCTGCTTGGTCAGCCTGGATCGCCTGACGATAAGAAACTTTACCTTATAGATCTCGGTTTAGgtatgcatttgtcaaatagtttttatctatgtattttactattccatatcactgtagtttctttgaaactatttatattttcttagtgctattttcccacttgcctcccccctttgttgttgttgttgttgatatgtggtacccaaattgtacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA