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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCCTACCCACTGCAATACGTTGGCATATAGTAGCTCTAAGGGATCCATTCGACTTGTTGATCTGCGCCAATCAGCCCTTTGCGACACTCATTATCAAATgtgagcttttagtttacactttttatttcctacaatatgttcagtatactctacttggagaatattgggtggatactgaccttatcaattatcctaaaagtttccttgtatttttatacctgttcatgtcttcttgtag

Basic information

species Zea mays
transcript GRMZM2G164185_T02
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G164185_T02 (Zea mays), 5'ss of exon 8
lower sequence: LOC_Os01g41630.1 (Oryza sativa), 5'ss of exon 8
ATCCTACCCACTGCAATACGTTGGCATATAGTAGCTCTAAGGGATCCATTCGACTTGTTGATCTGCGCCAATCAGCCCTTTGCGACACTCATTATCAAATgtgagcttttagtttacactttttatttcctacaatatgttcagtatactctacttgga-gaatattgggtggatactgaccttatcaattatcctaaaagtttccttgtatttttatacctgttcatgtcttcttgtag
| ||||| ||||| ||||| ||||| ||||||||||| ||||| ||||||||||||||||| ||| | || ||||||||||| ||||||||||  ||| |||||| ||| | ||   |||  |  | |  | ||||||  |||  ||| | || ||||| ||  ||  |||||||  || |||  ||  || | |  |   |||  |  |||   ||| ||| |||   | |   |||||
ACCCTACTCACTGTAATACATTGGCTTATAGTAGCTCAAAGGGCTCCATTCGACTTGTTGACCTGAGGCAGTCAGCCCTTTGTGACACTCATTCCCAAGTgtgagttttcatttgttactcatactctttttcaatat--tcaacatagtttatttggatgagcatctggtggat--tggcct-gtc--ttgttcgtactattttttattatagctattcctattc---tatgtgtgtag

upper sequence: GRMZM2G164185_T02 (Zea mays), 5'ss of exon 8
lower sequence: GLYMA15G02640.1 (Glycine max), 5'ss of exon 8
ATCCTACCCACTGCAATACGTTGGCATATAGTAGCTCTAAGGGATCCATTCGACTTGTTGATCTGCGCCAATCAGCCCTTTGCGACACTCATTATCAAATgtgag------cttttagtttacactttttatttcctacaatatgttcagtatactctacttggagaatattgggtggatactgaccttatcaattatcctaaaagtttccttgtatttttatacctgttcatgtcttcttgtag
| ||||| || || ||||||||||||||||| || || ||||| || ||||| ||||||||  |||| ||||||||  | || ||  |||||  | || ||| ||      |||||  | ||  ||| ||  |||||   |  | | |     | ||  |    |     ||         | ||  ||| ||| | |   || ||||  |                                  
ACCCTACACATTGTAATACGTTGGCATATAGCAGTTCAAAGGGTTCAATTCGTCTTGTTGACTTGCGACAATCAGCATTATGTGATTCTCATGCTAAACTgtaagtacattcttttgttataatcttgttggttcctgacaagtatcc----cattcctcccataaggcttt---------cagattttaacaaatgtttaaacagttgacag--------------------------------

upper sequence: GRMZM2G164185_T02 (Zea mays), 5'ss of exon 8
lower sequence: Vv04s0008g00840.t01 (Vitis vinifera), 5'ss of exon 8
ATCCTACCCACTGCAATACGTTGGCATATAGTAGCTCTAAGGGATCCATTCGACTTGTTGATCTGCGCCAATCAGCCCTTTGCGACACTCATTATCAAATgtgag----cttttagtttacactt--------------tttatttcctacaatatgttcagtatactctacttggagaatatt--gggtggatactgaccttatc-------aattatcctaaaagtt---tccttgtatt-tttatacctgttcatgtcttcttgtag
||||| |||||||||||| ||| |||||||||||||| || || || || || ||| ||||| |||| ||||||||  | || || || ||||   || ||||||    ||||| || |     |              ||| ||   ||||  || |  |  || || |  ||  |||| | |   |||    | ||   || |        | ||||    ||  ||   | ||  |||| ||| ||  || |||| |  || |  ||
ATCCTTCCCACTGCAATATGTTAGCATATAGTAGCTCAAAAGGCTCAATCCGTCTTATTGATTTGCGGCAATCAGCTTTATGTGATACACATTGCAAATTgtgagtgatcttttggtctttgtctagttttgtgtctcgtttcttgtttacatgatctagaagatcctttggtttcagaacactctaggtcagcaatggagttttttgtagatagttatgtggaattttaatttctgatattctttttaaatgctcatttgatcatacag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|91057148|gb|EB167566.1|EB167566
EST:     CGACTTGTTGATCTGCGCCAATCAGCCCTTTGCGACACTCATTATCAAAT                         CTTTGAGCAGCATGAGGCCCCAGGCTCAAGATCATTTTTCACTGAGATTAT
genomic: CGACTTGTTGATCTGCGCCAATCAGCCCTTTGCGACACTCATTATCAAATgtgagctttt ... cttcttgtagCTTTGAGCAGCATGAGGCCCCAGGCTCAAGATCATTTTTCACTGAGATTAT
EST: gi|67032341|gb|CO461090.1|CO461090
EST:     CGACTTGTTGATCTGCGCCAATCAGCCCTTTGCGACACTCATTATCAAAT                         CTTTGAGCAGCATGAGGCCCCAGGCTCAAGATCATTTTTCACTGAGATTAT
genomic: CGACTTGTTGATCTGCGCCAATCAGCCCTTTGCGACACTCATTATCAAATgtgagctttt ... cttcttgtagCTTTGAGCAGCATGAGGCCCCAGGCTCAAGATCATTTTTCACTGAGATTAT
EST: gi|31356630|gb|CD440987.1|CD440987
EST:     CGACTTGTTGATCTGCGCCAATCAGCCCTTTGCGACACTCATTATCAAAT                         CTTTGAGCAGCATGAGGCCCCAGGCTCAAGATCATTTTTCACTGAGATTAT
genomic: CGACTTGTTGATCTGCGCCAATCAGCCCTTTGCGACACTCATTATCAAATgtgagctttt ... cttcttgtagCTTTGAGCAGCATGAGGCCCCAGGCTCAAGATCATTTTTCACTGAGATTAT