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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCAGCATAGGAAAGATAGTCTTTCAAGGATGCAACCTTTTGTTATTCTTCTCGTCATAACCAACGTTCCCATGGCTTTATATATGTCCTTATTCCATCAAgtaggttttccctatttcattatttttgtattgctctatgcatctatggatcacttttgttgcttatccattatttccatttatatcccatattcaacattcattgtggcag

Basic information

species Zea mays
transcript GRMZM2G164175_T02
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G164175_T02 (Zea mays), 5'ss of exon 8
lower sequence: LOC_Os01g39810.4 (Oryza sativa), 5'ss of exon 4
TCAGCATAGGAAAGATAGTCTTTCAAGGATGCAACCTTTTGTTATTCTTCTCGTCATAACCAACGTTCCCATGGCTTTATATATGTCCTTATTCCATCAAgtaggtttt-ccctatttcattatttttgtattgctctatgcatctatggatcacttttgttgcttatccattatttccatttatatcccatattcaacattcatt-gtggcag--------------------------------
|||  ||  |||||   | ||||| ||| || | |  | ||| ||||| ||| || |||| || ||||| |||||||||||||||||||||| |||||||||| ||  | |  ||  | |  || ||  |  ||   | ||  | | ||| | | ||| |||||||     || |  | | |||  |    | ||||| |||| ||     | |                                
TCACAATGAGAAAGGACGACTTTCGAGGTTGAAGCTCTCTGTCATTCTGCTCATCCTAACAAATGTTCCAATGGCTTTATATATGTCCTTATACCATCAAgtaagtactactttaagtaaacatgttctttatg---tgtgtgttt-tgggttaatttggttgctttctatttgtgcctagttaacttttcttttcaagattcctttacttctgttatgtgtatgtgtaccttttcattatgtcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|40336287|gb|CK370357.1|CK370357
EST:     TCGTCATAACCAACGTTCCCATGGCTTTATATATGTCCTTATTCCATCAA                         AGGGGAACAGAAGACGCTATGTATTATTTGTC-AAAGAAGCCCATGATGGA
genomic: TCGTCATAACCAACGTTCCCATGGCTTTATATATGTCCTTATTCCATCAAgtaggttttc ... attgtggcagAGGGGAACAGAAGACGCTATGTATTATTTGTCAAAAGAAGCCCATGATGGA
EST: gi|71427411|gb|DR808461.1|DR808461
EST:     TCGTCATAACCAACGTTCCCATGGCTTTATATATGTCCTTATTCCATCAA                         AGGGGAACAGAAGACGCTATGTATTATTTGTCAAAAGAAGCCCATGATGGA
genomic: TCGTCATAACCAACGTTCCCATGGCTTTATATATGTCCTTATTCCATCAAgtaggttttc ... attgtggcagAGGGGAACAGAAGACGCTATGTATTATTTGTCAAAAGAAGCCCATGATGGA
EST: gi|71314140|gb|DR793687.1|DR793687
EST:     TCGTCATAACCAACGTTCCCATGGCTTTATATATGTCCTTATTCCATCAA                         AGGGGAACAGAAGACGCTATGTATTATTTGTCAAAAGAAGCCCATGATGGA
genomic: TCGTCATAACCAACGTTCCCATGGCTTTATATATGTCCTTATTCCATCAAgtaggttttc ... attgtggcagAGGGGAACAGAAGACGCTATGTATTATTTGTCAAAAGAAGCCCATGATGGA
EST: gi|71764471|gb|DR962408.1|DR962408
EST:     TCGTCATAACCAACGTTCCCATGGCTTTATATATGTCCTTATTCCATCAA                         AGGGGAACAGAAGACGCTATGTATTATTTGTCAAAAGAAGCCCATGATGGA
genomic: TCGTCATAACCAACGTTCCCATGGCTTTATATATGTCCTTATTCCATCAAgtaggttttc ... attgtggcagAGGGGAACAGAAGACGCTATGTATTATTTGTCAAAAGAAGCCCATGATGGA
EST: gi|6654204|gb|AW267609.1|AW267609
EST:     GCTTTAGATATGTCCTTATTCCATCAA                         AGGGGAACAGAAGACGCTATGTATTATTTGTCAAAAGAAGCCCATGATGGA
genomic: GCTTTATATATGTCCTTATTCCATCAAgtaggttttc ... attgtggcagAGGGGAACAGAAGACGCTATGTATTATTTGTCAAAAGAAGCCCATGATGGA
EST: gi|88748600|gb|DY532741.1|DY532741
EST:     TCGTCATAACCAACGTTCCCATGGCTTTATATATGTCCTTATTCCATCAA                         AGGGGAACAGAAGACGCTATGTATTATTTGTCAAAAGAAGCCCATGATGGA
genomic: TCGTCATAACCAACGTTCCCATGGCTTTATATATGTCCTTATTCCATCAAgtaggttttc ... attgtggcagAGGGGAACAGAAGACGCTATGTATTATTTGTCAAAAGAAGCCCATGATGGA
EST: gi|76932561|gb|DV173073.1|DV173073
EST:     TCGTCATAACCAACGTTCCCATGGCTTTATATATGTCCTTATTCCATCAA                         AGGGGAACAGAAGACGCTATGTATTATTTGTCAAAAGAAGCCCATGATGGA
genomic: TCGTCATAACCAACGTTCCCATGGCTTTATATATGTCCTTATTCCATCAAgtaggttttc ... attgtggcagAGGGGAACAGAAGACGCTATGTATTATTTGTCAAAAGAAGCCCATGATGGA
EST: gi|148948729|gb|EC898651.2|EC898651
EST:     TCGTCATAACCAACGTTCCCATGGCTTTATATATGTCCTTATTCCATCAA                         AGGGGAACAGAAGACGCTATGTATTATTTGTCAAAAGAAGCCCATGATGGA
genomic: TCGTCATAACCAACGTTCCCATGGCTTTATATATGTCCTTATTCCATCAAgtaggttttc ... attgtggcagAGGGGAACAGAAGACGCTATGTATTATTTGTCAAAAGAAGCCCATGATGGA
EST: gi|37392942|gb|CF633725.1|CF633725
EST:     TCGTCATAACCAACGTTCCCATGGCTTTATATATGTCCTTATTCCATCAA                         AGGGGAACAGAAGACGCTATGTATTATTTGTC-AAAGAAGCCCATGATGGA
genomic: TCGTCATAACCAACGTTCCCATGGCTTTATATATGTCCTTATTCCATCAAgtaggttttc ... attgtggcagAGGGGAACAGAAGACGCTATGTATTATTTGTCAAAAGAAGCCCATGATGGA