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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCTTCTTCCCGCAGAACATAATCGACGGCGTTAAAACCCCACTGTTCCTGCTAAATGCCGCATACGACTTCATTCAGgtgaacgttaatttttctcgctgtatggagcagacgccctaattagcatgcgttggtcccccag

Basic information

species Zea mays
transcript GRMZM2G164134_T01
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G164134_T01 (Zea mays), 5'ss of exon 8
lower sequence: LOC_Os01g21630.1 (Oryza sativa), 5'ss of exon 6
TGCTTCTTCCCGCAGAACATAATCGACGGCGTTAAAACCCCACTGTTCCTGCTAAATGCCGCATACGACTTCATTCAGgtgaacgttaatttttctcgctgtat----ggagcagacgccctaattagcatgcgttggtcccccag-------------------------------------------------------------------------------------------
||||||||||| |||||||||||||||||| | || || ||  | |||||||| ||||| || |||||| ||   |||||   |   | | |||   ||||  |       |  ||      || |   ||  ||     | |                                                                                              
TGCTTCTTCCCTCAGAACATAATCGACGGCATAAAGACACCCATCTTCCTGCTGAATGCGGCGTACGACGTCTGGCAGgtatgcacaagtctttgctgctgattccccatggttgatattgcaaattaaattagtaaaatctcgttctagcaaatgcatatgctcagatctaatctattgagaaatgaagaacatataaccgaatgcaaatatgtgaccggacgattcgttcatcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18172571|gb|BM347959.1|BM347959
EST:     GCATACGACTTCATTCAG                         ATTGTGCTCAGCCTGGCGCCAGACAGAGCTGACCCAAGCGGCGCTTGGCGA
genomic: GCATACGACTTCATTCAGgtgaacgtta ... ggtcccccagATTGTGCTCAGCCTGGCGCCAGACAGAGCTGACCCAAGCGGCGCTTGGCGA
EST: gi|18161973|gb|BM331812.1|BM331812
EST:     GCGTTAAAACCCCACTGTTCCTGCTAAATGCCGCATACGACTTCATTCAG                         ATTGTGCTCAGCCTGGCGCCAGACAGAGCTGACCCAAGCGGCGCTTGGCGA
genomic: GCGTTAAAACCCCACTGTTCCTGCTAAATGCCGCATACGACTTCATTCAGgtgaacgtta ... ggtcccccagATTGTGCTCAGCCTGGCGCCAGACAGAGCTGACCCAAGCGGCGCTTGGCGA