Sequence
atgc intronic sequence ATGC exonic sequenceCCTTGCCGAAAATGGTGGCATTCCCATTGGTATTGGGAAGAATTCACACATCAGAAAAGCAATCATTGACAAGAATGCTCGAATTGGAGATAATGTGAAGgtatttcaaactgatgttctaacggtcaagaatatattggtctatttttttaccttaagataccacataatacttgatatgttattttctcctcttaatt...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G163437_T01 (Zea mays), 5'ss of exon 8
lower sequence: LOC_Os08g25734.1 (Oryza sativa), 5'ss of exon 8
CCTTGCCGAAAATGGTGGCATTCCCATTGGTATTGGGAAGAATTCACACATCAGAAAAGCAATCATTGACAAGAATGCTCGAATTGGAGATAATGTGAAGgtatttcaaactgatgttctaacggtcaag-----aatatattggtctatttttttaccttaagataccacataatacttgatatgttattttctcctcttaatt
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CCTTGGTGAAAAAGGTGGCATTCCCATTGGTATTGGGAAGAATTGCCACATTAGAAGGGCAATCATCGACAAGAATGCTCGTATTGGAGATAATGTGAAGgtattccaaattgattttcttatcgttaagcatttaatatgtttatatgttcttactttttttaatgaattttactattcggtct-ttctcatctcttctc----
upper sequence: GRMZM2G163437_T01 (Zea mays), 5'ss of exon 8
lower sequence: GLYMA14G01290.1 (Glycine max), 5'ss of exon 8
CCTTGCCGAAAATGGTGGCATTCCCATTGGTATTGGGAAGAATTCACACATCAGAAAAGCAATCATTGACAAGAATGCTCGAATTGGAGATAATGTGAAGgtatttcaaactgatgttcta-acggtcaagaatatattggtctatttttttaccttaagataccacataatacttgatatgttattttctcctcttaatt--
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TCTGGCTGCCAAAGGCAGTGTTCCAATTGGTATAGGCAGGAACTCTCATATCAAAAGGGCAATTATTGACAAGAATGCTCGAATTGGGGAAAATGTCAAGgttatagcatcttctattatatacaattttg--ttcgttgttttacattctaagcc-attttttcccaagacaacaggtgaggcatagtagcttttaggtgat
upper sequence: GRMZM2G163437_T01 (Zea mays), 5'ss of exon 8
lower sequence: Vv12s0057g01480.t01 (Vitis vinifera), 5'ss of exon 8
CCTTGCCGAAAATGGTGGCATTCCCATTGGTATTGGGAAGAATTCACACATCAGAAAAGCAATCATTGACAAGAATGCTCGAATTGGAGATAATGTGAAGgt---atttcaaactgatgttctaacggtcaagaatatattggtctatttttttacc--ttaagataccac-ataatac--ttgatatgttattttctcctcttaatt-----------
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TCTAATGGCAAAAGGTAGTGTTCCAATTGGTATCGGTAAGAACTCTCACATCAAAAGAGCGATCATCGACAAGAATGCTCGCATCGGGGACAATGTGAAGgttgtgattttaattaac-ttagcatggattatttttcatcaatttcgttttctactggtaatgttgctatgatgatgaggttgtgattttaatttagcgaagaaatttgttatttcag
upper sequence: GRMZM2G163437_T01 (Zea mays), 5'ss of exon 8
lower sequence: PP1S76_105V6.1 (Physcomitrella patens), 5'ss of exon 8
CCTTGCCGAAAAT-GGTGGCATTCCCATTGGTATTGGGAAGAATTCACACATCAGAAAAGCAATCATTGACAAGAATGCTCGAATTGGAGATAATGTGAAGgtatttcaaact-gatgttctaacggtcaagaatatattggtctatttttttaccttaagataccacataatacttgatatgttattttctcctcttaatt
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-GTTGTTAGCCACAGGTGGCATTCCCATGGGTATTGGCAAAAATTCAGTTGTGAAAAGAGCAATTATCGACAAGAATGCACGAATCGGAGAAAATGTGAAGgtaggctatgttagatgttagaagttactgaatggaatcaaggcgtgttgtctttcgtgcacacaaatttgttcatgttgttcaaatccaactctatcgc-
upper sequence: GRMZM2G163437_T01 (Zea mays), 5'ss of exon 8
lower sequence: PP1S2_392V6.1 (Physcomitrella patens), 5'ss of exon 8
CCTTGCCGAAAAT-GGTGGCATTCCCATTGGTATTGGGAAGAATTCACACATCAGAAAAGCAATCATTGACAAGAATGCTCGAATTGGAGATAATGTGAAGgtat--ttcaaactgatgtt--ctaacggtcaagaatatattggtctatttttttaccttaagatacc--acataatacttgatatgttattttctcctcttaatt----------------------------------
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-GTTGCTAGCCTCAGGTGGCATACCCATGGGCATTGGAAGAAACTCTGTAGTGAAAAGAGCAATCATTGACAAAAATGCACGAATTGGAGAGAATGTTAAGgtatgctttgttctcactttggtaagctgcaagtagtattcatatgcacataatgagtttcataagtcttgtataatacatacatggaagtattaccattttgaatatggattaatggtcggacgttatcctttgtgtagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|32941128|gb|CF045947.1|CF045947EST: TCAGAAAAGCAATCATTGACAAGAATGCTCGAATTGGAGATAATGTGAAG ATACTCAACGCTGACAATGTTCAAGAAGCTGCAAGGGAGACAGACGGGTA
genomic: TCAGAAAAGCAATCATTGACAAGAATGCTCGAATTGGAGATAATGTGAAGgtatttcaaa ... gatcttgcagATACTCAACGCTGACAATGTTCAAGAAGCTGCAAGGGAGACAGACGGGTA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CCTTGCCGAAAATGGTGGCATTCCCATTGGTATTGGGAAGAATTCACACATCAGAAAAGCAATCATTGACAAGAATGCTCGAATTGGAGATAATGTGAAGgtatttcaaactgatgttctaacggtcaagaatatattggtctatttttttaccttaagataccacataatacttgatatgttattttctcctcttaatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT