1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
GCTAAGAGAACCATATGTTAGGACATTATTTGTTCAAGCTGATGGCATCAAGCTGCTCATTCCATTAATTTCCCCAGCTGCCACACAACAGTCAATTCAGgtgattgcttggccctaagcatctagaatggaaataccttggagaagagttgtctcattaggtgattagatcttagtagttcgattgttgacaacaggcataaactgtttcatctttcaaccctggaactaacttccacagctgtgttcctttttgttatttcttgtgcag
species | Zea mays |
transcript | GRMZM2G163233_T04 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: AGCTGCTCATTCCATTAATTTCCCCAGCTGCCACACAACAGTCAATTCAG CTCCTTTATGAAACTTGCCTCTGCATCTGGCTTTTATCATTTTATGATGCTEST: gi|67023139|gb|CO451888.1|CO451888
genomic: AGCTGCTCATTCCATTAATTTCCCCAGCTGCCACACAACAGTCAATTCAGgtgattgctt ... tcttgtgcagCTCCTTTATGAAACTTGCCTCTGCATCTGGCTTTTATCATTTTATGATGCT
EST: AGCTGCTCATTCCATTAATTTCCCCAGCTGCCACGCAACAGTCAATTCAG CTCCTTTATGAAACTTGCCTCTGCATCTGGCTTTTATCCTTTTATGATGCTEST: gi|71757599|gb|DR955536.1|DR955536
genomic: AGCTGCTCATTCCATTAATTTCCCCAGCTGCCACACAACAGTCAATTCAGgtgattgctt ... tcttgtgcagCTCCTTTATGAAACTTGCCTCTGCATCTGGCTTTTATCATTTTATGATGCT
EST: AGCTGCTCATTCCATTAATTTCCCCAGCTGCCACACAACAGTCAATTCAG CTCTTTTATGAAACTTGCCTCTGCATCTGGCTTTTATCATTTTATGATGCT
genomic: AGCTGCTCATTCCATTAATTTCCCCAGCTGCCACACAACAGTCAATTCAGgtgattgctt ... tcttgtgcagCTCCTTTATGAAACTTGCCTCTGCATCTGGCTTTTATCATTTTATGATGCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCTAAGAGAACCATATGTTAGGACATTATTTGTTCAAGCTGATGGCATCAAGCTGCTCATTCCATTAATTTCCCCAGCTGCCACACAACAGTCAATTCAGgtgattgcttggccctaagcatctagaatggaaataccttggagaagagttgtctcattaggtgattagatcttagtagttcgattgttgacaacaggcataaactgtttcatctttcaaccctggaactaacttccacagctgtgttcctttttgttatttcttgtgcag
- - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC