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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCAGGACATGATTTTCCTATTGTGTTTTATCTTGCTGTGGGTGGCTCCTTACTTTCTTACATATATTCAGCACCACCTCTCAAGgtacttgagcgtttcttctttattactgattctctttgaaaaatacttccttgagatgcaacatgccttttaattgaaagatgctcacaaaaacctcatcataaatttcag

Basic information

species Zea mays
transcript GRMZM2G162672_T02
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G162672_T01 (Zea mays), 5'ss of exon 8
lower sequence: LOC_Os05g28200.1 (Oryza sativa), 5'ss of exon 8
GCAGGACATGATTTTCCTATTGTGTTTTATCTTGCTGTGGGTGGCTCCTTACTTTCTTACATATATTCAGCACCACCTCTCAAGgtacttga-gcgtttcttctttattac-tgattctctttga-------aaaatacttccttgagatgcaacatgccttttaattgaaagatgctcacaaaaacctcatcataaatttcag
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GCAGGACATGATTTTCCTATTATTTTTTATCTTGCTGTTGGTGGGTCCTTGCTTTCTTACATATATTCAGCTCCACCTCTGAAGgtatttgatacatctgttctgaatcacacaatcccccttgtttttagtacagtacatcataattagtcaaca-gcttttgattgaaaaaattgaaaaaaaaacacccttgcacatttcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|149038823|gb|EE155536.2|EE155536
EST:     CTGTGGGTGGCTCCTTACTTTCTTACATATATTCAGCACCACCTCTCAAG                         CTCAAGCAGAATGGATGGATTGGGAACTTCGCTCTGGGTGCGAGTTACATC
genomic: CTGTGGGTGGCTCCTTACTTTCTTACATATATTCAGCACCACCTCTCAAGgtacttgagc ... taaatttcagCTCAAGCAGAATGGATGGATTGGGAACTTCGCTCTGGGTGCGAGTTACATC
EST: gi|211379068|gb|FL028409.1|FL028409
EST:     CTGTGGGTGGCTCCTTACTTTCTTACATATATTCAGCACCACCTCTCAAG                         CTCAAGCAGAATGGATGGA
genomic: CTGTGGGTGGCTCCTTACTTTCTTACATATATTCAGCACCACCTCTCAAGgtacttgagc ... taaatttcagCTCAAGCAGAATGGATGGA
EST: gi|211036106|gb|FL230098.1|FL230098
EST:     CCTTACTTTCTTACATATATTCAGCACCACCTCTCAAG                         CTCAAGCAGAATGGATGGATTGGGAACTTCGCTCTGGGTGCGAGTTACATC
genomic: CCTTACTTTCTTACATATATTCAGCACCACCTCTCAAGgtacttgagc ... taaatttcagCTCAAGCAGAATGGATGGATTGGGAACTTCGCTCTGGGTGCGAGTTACATC
EST: gi|61119511|gb|DN560472.1|DN560472
EST:     CTGTGGGTGGCTCCTTACTTTCTTACATATATTCAGCACCACCTCTCAAG                         CTCAAGCAGAATGGATGGATTGGGAACTTCGCTCTGGGTGCGAGTTACATC
genomic: CTGTGGGTGGCTCCTTACTTTCTTACATATATTCAGCACCACCTCTCAAGgtacttgagc ... taaatttcagCTCAAGCAGAATGGATGGATTGGGAACTTCGCTCTGGGTGCGAGTTACATC
EST: gi|78120047|gb|DV538431.1|DV538431
EST:     CTGTGGGTGGCTCCTTACTTTCTTACATATATTCAGCACCACCTCTCAAG                         CTCAAGCAGAATGGATGGATTGGGAACTTCGCTCTGGGTGCGAGTTACATC
genomic: CTGTGGGTGGCTCCTTACTTTCTTACATATATTCAGCACCACCTCTCAAGgtacttgagc ... taaatttcagCTCAAGCAGAATGGATGGATTGGGAACTTCGCTCTGGGTGCGAGTTACATC
EST: gi|149080582|gb|EE169625.2|EE169625
EST:     CTGTGGGTGGCTCCTTACTTTCTTACATATATTCAGCACCACCTCTCAAG                         CTCAAGCAGAATGGATGGATTGGGAACTTCGCTCTGGGTGCGAGTTACATC
genomic: CTGTGGGTGGCTCCTTACTTTCTTACATATATTCAGCACCACCTCTCAAGgtacttgagc ... taaatttcagCTCAAGCAGAATGGATGGATTGGGAACTTCGCTCTGGGTGCGAGTTACATC