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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTAGCCACAAAATAAACAAACTGTCCTTTGGGACAGAATTCCCTGGTGTTGTTAATCCACTTGATGGgtaactatctatgtttcattcagtgagcataaaatggtgcccattgttttaggcacacctattaacctaaatatgtattttcttactctaaaccacttcaccatttatgaacacag

Basic information

species Zea mays
transcript GRMZM2G161019_T01
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G161019_T01 (Zea mays), 5'ss of exon 8
lower sequence: LOC_Os05g41120.1 (Oryza sativa), 5'ss of exon 8
ATTAGCCACAAAATAAACAAACTGTCCTTTGGGACAGAATTCCCTGGTGTTGTTAATCCACTTGATGGgtaactatctatgtttcattcagtgagcataaaatggtgccc--------attgttttaggcacac-ctattaacctaaatatgtattttcttactct-aaaccacttcaccatttatgaaca-cag
|| |  ||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||  |   ||  | |   ||| |||||||| |||  |  ||        ||| |  |||  | |   |  |    | ||| | ||| ||  ||| || |   |    ||   || ||||||  |||
ATCACACACAAAATAAATAAACTGTCTTTTGGGACAGAATTCCCTGGTGTTGTTAATCCACTTGATGGgtacgtccatagctctagctcattgagcatataattatagccttgcacttattctcctagttatatatttcttttttcaatttttatctttgtaccctcatgtcctaacaaatttcatgaacgtcag

upper sequence: GRMZM2G161019_T01 (Zea mays), 5'ss of exon 8
lower sequence: Vv12s0178g00020.t01 (Vitis vinifera), 5'ss of exon 8
ATTAGCCACAAAATAAACAAACTGTCCTTTGGGACAGAATTCCCTGGTGTTGTTAATCCACTTGATGGgtaactatctatgtttcattcagtgagcataaaatggtgcccattgttttaggcacacctattaacctaaatatgtattttcttactctaaaccacttcaccatttatgaacacag
|| || ||||  || || ||| |  | |||||     | |||||||||||||| ||||| |||||||||||||||  |   | || |   |   |  ||  |  |   |  ||  ||  | |    || ||||   | | ||  || |  ||  | |||||   || | | |||          
ATAAGTCACAGGATCAATAAATTAGCTTTTGGAGACCATTTCCCTGGTGTTGTAAATCCCCTTGATGGgtaactactt---tctcctcttgcacggctatcactgatacagttaattatgccttttctcttaaaa-agaaattgatatggttggt-taaac--attaatcctttg---------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|94476603|gb|EB705561.1|EB705561
EST:     AAACTGTCCTTTGGGACAGAATTCCCTGGTGTTGTTAATCCACTTGATGG                         TGCTCAGTGGACACAGCCAGCTTCAGATGGGACATACCAGTATTTCATAAA
genomic: AAACTGTCCTTTGGGACAGAATTCCCTGGTGTTGTTAATCCACTTGATGGgtaactatct ... atgaacacagTGCTCAGTGGACACAGCCAGCTTCAGATGGGACATACCAGTATTTCATAAA