1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GGTTATTGGATGGTTAAGCGTGCTGTAGGAACAAAAGCTTGCCTTCTGGGCAAAGCAGTAACGTGCAATTATCTTCGCCAGGATAACTTTCTGGAGgtaaattcattatgaaaaaaataatcagcaccttccctaaaccaccttaggaagcactgtgttgggtagcaaattttgatgtttaatataaaactacatcagaatttacctatatcatatattgatatttcctttctttttcttttgttatttaagtctttcacctgttttgtctactataaatgaaatgtactttgcag
species | Zea mays |
transcript | GRMZM2G160927_T01 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: TGGGCAAAGCACTAACGTGCAATTATCTTCACCAGGATAACTTTCTGGAG ATAGATGTTGACATCGGTTCATCATCCGTTGCCCGGAGCATTATTGGTCTAEST: gi|211510092|gb|FL332408.1|FL332408
genomic: TGGGCAAAGCAGTAACGTGCAATTATCTTCGCCAGGATAACTTTCTGGAGgtaaattcat ... tactttgcagATAGATGTTGACATCGGTTCATCATCCGTTGCCCGGAGCATTATTGGTCTA
EST: TGGGTAAAGCAGTAACGTGCAATTATCTTCGCCAGGATAACTTTCTGGAG ATAGATGTTGACATCGGTTCATCATCTGTTGCCCGGAGCATTATTGGTCTAEST: gi|32839402|gb|CD979083.1|CD979083
genomic: TGGGCAAAGCAGTAACGTGCAATTATCTTCGCCAGGATAACTTTCTGGAGgtaaattcat ... tactttgcagATAGATGTTGACATCGGTTCATCATCCGTTGCCCGGAGCATTATTGGTCTA
EST: TGGGCAAAGCAGTAACGTGCAATTATCTTCGCCAGGATAACTTTCTGGAG ATAGATGTTGACATCGGTTCATCATCCGTTGCCCGGAGCATTATTGGTCTAEST: gi|37394737|gb|CF634645.1|CF634645
genomic: TGGGCAAAGCAGTAACGTGCAATTATCTTCGCCAGGATAACTTTCTGGAGgtaaattcat ... tactttgcagATAGATGTTGACATCGGTTCATCATCCGTTGCCCGGAGCATTATTGGTCTA
EST: TGGGCAAAGCAGTAACGTGCAATTATCTTCGCCAGGATAACTTTCTGGAG ATAGATGTTGACATCGGTTCATCATCTGTTGCCCGGAGCATTATTGGTCTAEST: gi|32837394|gb|CD977072.1|CD977072
genomic: TGGGCAAAGCAGTAACGTGCAATTATCTTCGCCAGGATAACTTTCTGGAGgtaaattcat ... tactttgcagATAGATGTTGACATCGGTTCATCATCCGTTGCCCGGAGCATTATTGGTCTA
EST: TGGGCAAAGCAGTAACGTGCAATTATCTTCGCCAGGATAACTTTCTGGAG ATAGATGTTGACATCGGTTCATCATCCGTTGCCCGGAGCATTATTGGTCTAEST: gi|71439002|gb|DR820052.1|DR820052
genomic: TGGGCAAAGCAGTAACGTGCAATTATCTTCGCCAGGATAACTTTCTGGAGgtaaattcat ... tactttgcagATAGATGTTGACATCGGTTCATCATCCGTTGCCCGGAGCATTATTGGTCTA
EST: TGGGCAAAGCAGTAACGTGCAATTATCTTCGCCAGGATAACTTTCTGGAG ATAGATGTTGACATCGGTTCATCATCCGTTGCCCGGAGCATTATTGGTCTAEST: gi|211119644|gb|FL444181.1|FL444181
genomic: TGGGCAAAGCAGTAACGTGCAATTATCTTCGCCAGGATAACTTTCTGGAGgtaaattcat ... tactttgcagATAGATGTTGACATCGGTTCATCATCCGTTGCCCGGAGCATTATTGGTCTA
EST: TGGGTAAAGCAGTAACGTGCAATTATCTTCGCCAGGATAACTTTCTGGAG ATAGATGTTGACATCGGTTCATCATCTGTTGCCCGGAGCATTATTGGTCTAEST: gi|60338548|gb|DN205521.1|DN205521
genomic: TGGGCAAAGCAGTAACGTGCAATTATCTTCGCCAGGATAACTTTCTGGAGgtaaattcat ... tactttgcagATAGATGTTGACATCGGTTCATCATCCGTTGCCCGGAGCATTATTGGTCTA
EST: TGGGCAAAGCAGTAACGTGCAATTATCTTCGCCAGGATAACTTTCTGGAG ATAGATGTTGACATCGGTTCATCATCCGTTGCCCGGAGCATTATTGGTCTAEST: gi|211043352|gb|FL434187.1|FL434187
genomic: TGGGCAAAGCAGTAACGTGCAATTATCTTCGCCAGGATAACTTTCTGGAGgtaaattcat ... tactttgcagATAGATGTTGACATCGGTTCATCATCCGTTGCCCGGAGCATTATTGGTCTA
EST: TGGGCAAAGCAGTAACGTGCAATTATCTTCGCCAGGATAACTTTCTGGAG ATAGATGTTGACATCGGTTCATCATCCGTTGCCCGGAGCATTATTGGTCTAEST: gi|33942624|gb|CF349224.1|CF349224
genomic: TGGGCAAAGCAGTAACGTGCAATTATCTTCGCCAGGATAACTTTCTGGAGgtaaattcat ... tactttgcagATAGATGTTGACATCGGTTCATCATCCGTTGCCCGGAGCATTATTGGTCTA
EST: TGGGCAAAGCAGTAACGTGCAATTATCTTCGCCAGGATAACTTTCTGGAG ATAGATGTTGACATCGGTTCATCATCTGTTGCCCGGAGCATTATTGGTCTAEST: gi|94476383|gb|EB705341.1|EB705341
genomic: TGGGCAAAGCAGTAACGTGCAATTATCTTCGCCAGGATAACTTTCTGGAGgtaaattcat ... tactttgcagATAGATGTTGACATCGGTTCATCATCCGTTGCCCGGAGCATTATTGGTCTA
EST: TGGGCAAAGCAGTAACGTGCAATTATCTTCGCCAGGATAACTTTCTGGAG ATAGATGTTGACATCGGTTCATCATCCGTTGCCCGGAGCATTATTGGTCTAEST: gi|8273067|gb|BE012162.1|BE012162
genomic: TGGGCAAAGCAGTAACGTGCAATTATCTTCGCCAGGATAACTTTCTGGAGgtaaattcat ... tactttgcagATAGATGTTGACATCGGTTCATCATCCGTTGCCCGGAGCATTATTGGTCTA
EST: TGGGCAAAGCAGTAACGTGCAATTATCTTCGCCAGGATAACTTTCTGGAG ATAGATGTTGACATCGG-TCATCATCCGTTGCCCGGAGCATTATTGGTCTAEST: gi|32935302|gb|CF040114.1|CF040114
genomic: TGGGCAAAGCAGTAACGTGCAATTATCTTCGCCAGGATAACTTTCTGGAGgtaaattcat ... tactttgcagATAGATGTTGACATCGGTTCATCATCCGTTGCCCGGAGCATTATTGGTCTA
EST: TGGGCAAAGCAGTAACGTGCAATTATCTTCGCCAGGATAACTTTCTGGAG ATAGATGTTGACATCGGTTCATCATCCGTTGCCCGGAGCATTATTGGTCTAEST: gi|32837391|gb|CD977069.1|CD977069
genomic: TGGGCAAAGCAGTAACGTGCAATTATCTTCGCCAGGATAACTTTCTGGAGgtaaattcat ... tactttgcagATAGATGTTGACATCGGTTCATCATCCGTTGCCCGGAGCATTATTGGTCTA
EST: TGGGCAAAGCAGTAACGTGCAATTATCTTCGCCAGGATAACTTTCTGGAG ATAGATGTTGACATCGGTTCATCATCCGTTGCCCGGAGCATTATTGGTCTA
genomic: TGGGCAAAGCAGTAACGTGCAATTATCTTCGCCAGGATAACTTTCTGGAGgtaaattcat ... tactttgcagATAGATGTTGACATCGGTTCATCATCCGTTGCCCGGAGCATTATTGGTCTA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGTTATTGGATGGTTAAGCGTGCTGTAGGAACAAAAGCTTGCCTTCTGGGCAAAGCAGTAACGTGCAATTATCTTCGCCAGGATAACTTTCTGGAGgtaaattcattatgaaaaaaataatcagcaccttccctaaaccaccttaggaagcactgtgttgggtagcaaattttgatgtttaatataaaactacatcagaatttacctatatcatatattgatatttcctttctttttcttttgttatttaagtctttcacctgttttgtctactataaatgaaatgtactttgcag
- - - - - - - - - - - - - - - - - - - - - - - - GCAAAG