Skip to another splice site:
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGAAGATTATGATGGTGGCCGGGACTTGGATGACTTTGTCAAGTTCATTAATGAGAAGTGTGGCACCAGCCGGGATCCAAAGGGCCACCTGAATCAAGAGgttggttataaagctaagcgaaatcgctttggaagcaagttgatgaattctggatctgatgcattctgttcatgtgttgctgtgtag

Basic information

species Zea mays
transcript GRMZM2G159369_T01
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G159369_T01 (Zea mays), 5'ss of exon 8
lower sequence: LOC_Os05g06430.1 (Oryza sativa), 5'ss of exon 8
TGAAGATTATGATGGTGGCCGGGACTTGGATGACTTTGTCAAGTTCATTAATGAGAAGTGTGGCACCAGCCGGGATCCAAAGGGCCACCTGAATCAAGAGgttggttataaagctaagcgaaatcgctttgg-aagcaagttgatgaattctggatctgatgcattctgttcatgtgttgctgtgtag
||||||||||||||| || || || ||||||||||| |||||||| ||||||||||| ||||| |||||||| ||| ||||||| || || | |  |||||| |    |  |  ||   |||    |||    |   || || |   | ||    ||  ||  | ||| ||  | || | ||||    
TGAAGATTATGATGGCGGTCGCGAGTTGGATGACTTCGTCAAGTTTATTAATGAGAAATGTGGAACCAGCCGTGATTCAAAGGGTCAGCTTACTTCAGAGgtagtgcttttatata---gaaggtacttaaatacttaaatttacataatccaattccaatataatctattggt-tgcttctgtag--
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|60400615|gb|DN233422.1|DN233422
EST:     ATGAGAAGTGTGGCACCAGCCGGGATCCAAAGGGCCACCTGAATCAAGAG                         GCTGGGCTTGTGCCAAGCTTGAATCCTCTTGTGAAGGAGTTTCTCAATGCT
genomic: ATGAGAAGTGTGGCACCAGCCGGGATCCAAAGGGCCACCTGAATCAAGAGgttggttata ... tgctgtgtagGCTGGGCTTGTGCCAAGCTTGAATCCTCTTGTGAAGGAGTTTCTCAATGCT
EST: gi|60349176|gb|DN216149.1|DN216149
EST:     ATGAGAAGTGTGGCACCAGCCGGGATCCAAAGGGCCACCTGAATCAAGAG                         GCTGGGCTTGTGCCAAGCTTGAATCCTCTTGTGAAGGAGTTTCTCAATGCT
genomic: ATGAGAAGTGTGGCACCAGCCGGGATCCAAAGGGCCACCTGAATCAAGAGgttggttata ... tgctgtgtagGCTGGGCTTGTGCCAAGCTTGAATCCTCTTGTGAAGGAGTTTCTCAATGCT
EST: gi|33101695|gb|CF061655.1|CF061655
EST:     CCACCTGAATCAAGAG                         GCTGGGCTTGTGCCAAGCTTGAATCCTCTTGTGAAGGAGTTTCTCAATGCT
genomic: CCACCTGAATCAAGAGgttggttata ... tgctgtgtagGCTGGGCTTGTGCCAAGCTTGAATCCTCTTGTGAAGGAGTTTCTCAATGCT
EST: gi|241994843|gb|GR421187.1|GR421187
EST:     ATGAGAAGTGTGGCACCAGCCGGGATCCAAAGGGCCACCTGAATCAAGAG                         GCTGGGCTTGTGCCAAGCTTGAATCCTCTTGTGAAGGAGTTTCTCAATGCT
genomic: ATGAGAAGTGTGGCACCAGCCGGGATCCAAAGGGCCACCTGAATCAAGAGgttggttata ... tgctgtgtagGCTGGGCTTGTGCCAAGCTTGAATCCTCTTGTGAAGGAGTTTCTCAATGCT
EST: gi|148932685|gb|EC876639.2|EC876639
EST:     ATGAGAAG-GTGGCACCAGCCGGGATCCAAAGGGCCACCTGAATCAAGAG                         GCTGGGCTTGTGCCAAGCTTGAATCCTCTTGTGAAGGAGTTTCTCAATGCT
genomic: ATGAGAAGTGTGGCACCAGCCGGGATCCAAAGGGCCACCTGAATCAAGAGgttggttata ... tgctgtgtagGCTGGGCTTGTGCCAAGCTTGAATCCTCTTGTGAAGGAGTTTCTCAATGCT
EST: gi|86466435|gb|DY232805.1|DY232805
EST:     ATGAGAAGTGTGGCACCAGCCGGGATCCAAAGGGCCACCTGAATCAAGAG                         GCTGGGCTTGTGCCAAGCTTGAATCCTCTTGTGAAGGAGTTTCTCAATGCT
genomic: ATGAGAAGTGTGGCACCAGCCGGGATCCAAAGGGCCACCTGAATCAAGAGgttggttata ... tgctgtgtagGCTGGGCTTGTGCCAAGCTTGAATCCTCTTGTGAAGGAGTTTCTCAATGCT
EST: gi|4647206|gb|AI622281.1|AI622281
EST:     TGTGGCACCAGCCGGGATCCAAAGGGCCNCCTGAATCAAGAG                         GCTGGGCTTGTGCCAAGCTTGAATCCTCTTGTGAAGGAGTTTCTCAATGCT
genomic: TGTGGCACCAGCCGGGATCCAAAGGGCCACCTGAATCAAGAGgttggttata ... tgctgtgtagGCTGGGCTTGTGCCAAGCTTGAATCCTCTTGTGAAGGAGTTTCTCAATGCT
EST: gi|32857597|gb|CD997278.1|CD997278
EST:     ATGAGAAGTGTGGCACCAGCCGGGATCCAAAGGGCCGCCTGAATCAAGAG                         GCTGGGCTTGTGCCAAGCTTGAATCCTCTTGTGAAGGAGTTTCTCAATGCT
genomic: ATGAGAAGTGTGGCACCAGCCGGGATCCAAAGGGCCACCTGAATCAAGAGgttggttata ... tgctgtgtagGCTGGGCTTGTGCCAAGCTTGAATCCTCTTGTGAAGGAGTTTCTCAATGCT
EST: gi|32847846|gb|CD987527.1|CD987527
EST:     ATGAGAAGTGCGGCACCAGCCGGGATCCAAAGGGCCACCTGAATCAAGAG                         GCTGGTCTTGTGCCAAGCTTGAATCCTGTTGTGAAGGAGTTTCTCAATGCT
genomic: ATGAGAAGTGTGGCACCAGCCGGGATCCAAAGGGCCACCTGAATCAAGAGgttggttata ... tgctgtgtagGCTGGGCTTGTGCCAAGCTTGAATCCTCTTGTGAAGGAGTTTCTCAATGCT
EST: gi|148929737|gb|EC876638.2|EC876638
EST:     ATGAGAAGTGTGGCACCAGCCGGGATCCAAAGGGCCACCTGAATCAAGAG                         GCTGGGCTTGTGCCAAGCTTGAATCCTCTTGTGAAGGAGTTTCTCAATGCT
genomic: ATGAGAAGTGTGGCACCAGCCGGGATCCAAAGGGCCACCTGAATCAAGAGgttggttata ... tgctgtgtagGCTGGGCTTGTGCCAAGCTTGAATCCTCTTGTGAAGGAGTTTCTCAATGCT
EST: gi|60350336|gb|DN217309.1|DN217309
EST:     ATGAGAAGTGTGGCACCAGCCGGGATCCAAAGGGCCACCTGAATCAAGAG                         GCTGGGCTTGTGCCAAGCTTGAATCCTCTTGTGAAGGAGTTTCTCAATGCT
genomic: ATGAGAAGTGTGGCACCAGCCGGGATCCAAAGGGCCACCTGAATCAAGAGgttggttata ... tgctgtgtagGCTGGGCTTGTGCCAAGCTTGAATCCTCTTGTGAAGGAGTTTCTCAATGCT
EST: gi|37380832|gb|CF627255.1|CF627255
EST:     ATGAGAAGTGTGGCACCAGCCGGGATCCAAAGGGCCACCTGAATCAAGAG                         GCTGGGTTTGTGCCAAGCTTGAATCCTCTTGTGAAGGAGTTTCTCAATGCT
genomic: ATGAGAAGTGTGGCACCAGCCGGGATCCAAAGGGCCACCTGAATCAAGAGgttggttata ... tgctgtgtagGCTGGGCTTGTGCCAAGCTTGAATCCTCTTGTGAAGGAGTTTCTCAATGCT
EST: gi|60399092|gb|DN231906.1|DN231906
EST:     CGGGATCCAAAGGGCCACCTGAATCAAGAG                         GCTGGGCTTGTGCCAAGCTTGAATCCTCTTGTGAAGGAGTTTTTCAATGCT
genomic: CGGGATCCAAAGGGCCACCTGAATCAAGAGgttggttata ... tgctgtgtagGCTGGGCTTGTGCCAAGCTTGAATCCTCTTGTGAAGGAGTTTCTCAATGCT
EST: gi|32849063|gb|CD988744.1|CD988744
EST:     ATGAGAAGTGTGGCACCAGCCGGGATCCAAAGGGCCACCTGAATCAAGAG                         GCTGGGCTTGTGCCAAGCTTGAATCCCCTTGTGAAGGAGTTTCTCAATGCT
genomic: ATGAGAAGTGTGGCACCAGCCGGGATCCAAAGGGCCACCTGAATCAAGAGgttggttata ... tgctgtgtagGCTGGGCTTGTGCCAAGCTTGAATCCTCTTGTGAAGGAGTTTCTCAATGCT
EST: gi|24934298|gb|CA452516.1|CA452516
EST:     ATGAGAAGTGTGGCACCAGCCGGGATCCAAAGGGCCACCTGAATCAAGAG                         GCTGGGCTTGTGCCAAGCTTGAATCCTCTTGTGAAGGAGTTTCTCAATGCT
genomic: ATGAGAAGTGTGGCACCAGCCGGGATCCAAAGGGCCACCTGAATCAAGAGgttggttata ... tgctgtgtagGCTGGGCTTGTGCCAAGCTTGAATCCTCTTGTGAAGGAGTTTCTCAATGCT
EST: gi|24767522|gb|CA402664.1|CA402664
EST:     CGGGATCCAAAGGCCCACCTGAATCAAGAG                         GCTGGGCTTGTGCCAAGCTTGAATCCTCTTGTGAAGGAGTTTCTCAATGCT
genomic: CGGGATCCAAAGGGCCACCTGAATCAAGAGgttggttata ... tgctgtgtagGCTGGGCTTGTGCCAAGCTTGAATCCTCTTGTGAAGGAGTTTCTCAATGCT
EST: gi|74239675|gb|DT647589.1|DT647589
EST:     ATGAGAAGTGTGGCACCAGCCGGGATCCAAAGGGCCACCTGAATCAAGAG                         GCTGGGCTTGTGCCAAGCTTGAATCCTCTTGTGAAGGAGTTTCTCAATGCT
genomic: ATGAGAAGTGTGGCACCAGCCGGGATCCAAAGGGCCACCTGAATCAAGAGgttggttata ... tgctgtgtagGCTGGGCTTGTGCCAAGCTTGAATCCTCTTGTGAAGGAGTTTCTCAATGCT
EST: gi|28575999|gb|CB281891.1|CB281891
EST:     ATGAGAAGTGTGGCACCAGCCGGGATCCAAAGGGCCACCTGAATCAAGAG                         GCTGGGCTTGTGCCAAGCTTGAATCCTCTTGTGAAGGAGTTTCTCAATGCT
genomic: ATGAGAAGTGTGGCACCAGCCGGGATCCAAAGGGCCACCTGAATCAAGAGgttggttata ... tgctgtgtagGCTGGGCTTGTGCCAAGCTTGAATCCTCTTGTGAAGGAGTTTCTCAATGCT
EST: gi|5922104|gb|AW055498.1|AW055498
EST:     ATGAGAAGTGTGGCACCAGCCGGGATCCAAAGGGCCACCTGAATCAAGAG                         GCTGGGCTTGTGCCAAGCTTGAATCCTCTTGTGAAGGAGTTTCTCAATGCT
genomic: ATGAGAAGTGTGGCACCAGCCGGGATCCAAAGGGCCACCTGAATCAAGAGgttggttata ... tgctgtgtagGCTGGGCTTGTGCCAAGCTTGAATCCTCTTGTGAAGGAGTTTCTCAATGCT
EST: gi|4646531|gb|AI491677.2|AI491677
EST:     CTGAATCAAGAG                         GCTGGGCTTGTGCCAAGCTTGAATCCTCTTGTGAAGGAGTTTCTCAATGCT
genomic: CTGAATCAAGAGgttggttata ... tgctgtgtagGCTGGGCTTGTGCCAAGCTTGAATCCTCTTGTGAAGGAGTTTCTCAATGCT
EST: gi|67039449|gb|CO465704.1|CO465704
EST:     ATGAGAAGTGTGGCACCAGCCGGGATCCAAAGGGCCACCTGAATCAAGAG                         GCTGGGCTTGTGCCAAGCTTGAATCCTCTTGTGAAGGAGTTTCTCAATGCT
genomic: ATGAGAAGTGTGGCACCAGCCGGGATCCAAAGGGCCACCTGAATCAAGAGgttggttata ... tgctgtgtagGCTGGGCTTGTGCCAAGCTTGAATCCTCTTGTGAAGGAGTTTCTCAATGCT
EST: gi|32848046|gb|CD987727.1|CD987727
EST:     ATGAGAAGTGTGGCACCAGCCGGGATCCAAAGGGCCACCTGAATCAAGAG                         GCTGGGCTTGTGCCAAGCTTGAATCCTCTTGTGAAGGAGTTTCTCAATGCT
genomic: ATGAGAAGTGTGGCACCAGCCGGGATCCAAAGGGCCACCTGAATCAAGAGgttggttata ... tgctgtgtagGCTGGGCTTGTGCCAAGCTTGAATCCTCTTGTGAAGGAGTTTCTCAATGCT
EST: gi|71445959|gb|DR827009.1|DR827009
EST:     ATGAGAAGTGTGGCACCAGCCGGGATCCAAAGGGCCACCTGAATCANGAG                         GCTGGGCTTGTGCCGAGCTTGAATCCTCTTGTGAAGGAGTTTCTC
genomic: ATGAGAAGTGTGGCACCAGCCGGGATCCAAAGGGCCACCTGAATCAAGAGgttggttata ... tgctgtgtagGCTGGGCTTGTGCCAAGCTTGAATCCTCTTGTGAAGGAGTTTCTC
EST: gi|37379835|gb|CF626683.1|CF626683
EST:     ATGAGAAGTGTGGCACCAGCCGGGATCCAAAGGGCCACCTGAATCAAGAG                         GCTGGGCTTGTGCCAAGCTTGAATCCTCTTGTGAAGGAGTTTCTCAATGCT
genomic: ATGAGAAGTGTGGCACCAGCCGGGATCCAAAGGGCCACCTGAATCAAGAGgttggttata ... tgctgtgtagGCTGGGCTTGTGCCAAGCTTGAATCCTCTTGTGAAGGAGTTTCTCAATGCT
EST: gi|32940600|gb|CF045419.1|CF045419
EST:     ATGAGAAGTGTGGCACCAGCCGGGATCCAAAGGGCCACCTGAATCAAGAG                         GCTGGGCTTGTGCCAAGCTTGAATCCTCTTGTGAAGGAGTTTCTCAATGCT
genomic: ATGAGAAGTGTGGCACCAGCCGGGATCCAAAGGGCCACCTGAATCAAGAGgttggttata ... tgctgtgtagGCTGGGCTTGTGCCAAGCTTGAATCCTCTTGTGAAGGAGTTTCTCAATGCT
EST: gi|78545093|gb|DV622591.1|DV622591
EST:     ATGAGAAGTGTGGCACCAGCCGGGATCCAAAGGGCCACCTGAATCAAGAG                         GCTGGGCTTGTGCCAAGCTTGAATCCTCTTGTGAAGGAGTTTCTCAATGCT
genomic: ATGAGAAGTGTGGCACCAGCCGGGATCCAAAGGGCCACCTGAATCAAGAGgttggttata ... tgctgtgtagGCTGGGCTTGTGCCAAGCTTGAATCCTCTTGTGAAGGAGTTTCTCAATGCT
EST: gi|31355506|gb|CD439863.1|CD439863
EST:     ATGAGAAGTGTGGCACCAGCCGGGATCCAAAGGGCCACCTGAATCAAGAG                         GCTGGGCTTGTGCCAAGCTTGAATCCTCTTGTGAAGGAGTTTCTCAATGCT
genomic: ATGAGAAGTGTGGCACCAGCCGGGATCCAAAGGGCCACCTGAATCAAGAGgttggttata ... tgctgtgtagGCTGGGCTTGTGCCAAGCTTGAATCCTCTTGTGAAGGAGTTTCTCAATGCT
EST: gi|148961930|gb|EE012722.2|EE012722
EST:     ATGAGAAGTGTGGCACCAGCCGGGATCCAAAGGGCCACCTGAATCAAGAG                         GCTGGGTTTGTGCCAAGCCTGAATCCTCCTGTGAAGGAGTTTCTCAATGCT
genomic: ATGAGAAGTGTGGCACCAGCCGGGATCCAAAGGGCCACCTGAATCAAGAGgttggttata ... tgctgtgtagGCTGGGCTTGTGCCAAGCTTGAATCCTCTTGTGAAGGAGTTTCTCAATGCT
EST: gi|31558598|gb|CD527810.1|CD527810
EST:     ATGAGAAGTGTGGCACCAGCCGGGATCCAAAGGGCCACCTGAATCAAGAG                         GCTGGGCTTGTGCCAAGCTTGAATCCTCTTGTGAAGGAGTTTCTCAATGCT
genomic: ATGAGAAGTGTGGCACCAGCCGGGATCCAAAGGGCCACCTGAATCAAGAGgttggttata ... tgctgtgtagGCTGGGCTTGTGCCAAGCTTGAATCCTCTTGTGAAGGAGTTTCTCAATGCT
EST: gi|113854582|gb|DW976283.1|DW976283
EST:     ATGAGAAGTGTGGCACCAGCCGGGATCCAAAGGGCCACCTGAATCAAGAG                         GCTGGGCTTGTGCCAAGC
genomic: ATGAGAAGTGTGGCACCAGCCGGGATCCAAAGGGCCACCTGAATCAAGAGgttggttata ... tgctgtgtagGCTGGGCTTGTGCCAAGC
EST: gi|33091270|gb|CF051264.1|CF051264
EST:     AGCCGGGATCCAAAGGGCCACCTGAATCAAGAG                         GCTGGGCTTGTGCCAAGCTTGAATCCTCTTGTGAAGGAGTTTCTCAATGCT
genomic: AGCCGGGATCCAAAGGGCCACCTGAATCAAGAGgttggttata ... tgctgtgtagGCTGGGCTTGTGCCAAGCTTGAATCCTCTTGTGAAGGAGTTTCTCAATGCT
EST: gi|71326461|gb|DR799910.1|DR799910
EST:     ATGAGAAGTGTGGCACCAGCCGGGATCCAAAGGGCCACCTGAATCAAGAG                         GCTGGGCTTGTGCCAAGCTTGAATCCTCTTGTGAAGGAGTTTCTCATTGCT
genomic: ATGAGAAGTGTGGCACCAGCCGGGATCCAAAGGGCCACCTGAATCAAGAGgttggttata ... tgctgtgtagGCTGGGCTTGTGCCAAGCTTGAATCCTCTTGTGAAGGAGTTTCTCAATGCT
EST: gi|71326463|gb|DR799911.1|DR799911
EST:     ATGAGAAGTGTGGCACCAGCCGGGATCCAAAGGGCCACCTGAATCAAGAG                         GCTGGGCTTGTGCCAAGCTTGAATCCTCTTGTGAAGGAGTTTCTCAATGCT
genomic: ATGAGAAGTGTGGCACCAGCCGGGATCCAAAGGGCCACCTGAATCAAGAGgttggttata ... tgctgtgtagGCTGGGCTTGTGCCAAGCTTGAATCCTCTTGTGAAGGAGTTTCTCAATGCT
EST: gi|32933996|gb|CF038808.1|CF038808
EST:     ATGAGAAGTGTGGCACCAGCCGGGATCCAAAGGGCCACCTGAATCAAGAG                         GCTGGGCTTGTGCCAAGCTTGAATCCTCTTGTGAAGGAGTTTCTCAATGCT
genomic: ATGAGAAGTGTGGCACCAGCCGGGATCCAAAGGGCCACCTGAATCAAGAGgttggttata ... tgctgtgtagGCTGGGCTTGTGCCAAGCTTGAATCCTCTTGTGAAGGAGTTTCTCAATGCT
EST: gi|60356885|gb|DN223858.1|DN223858
EST:     ATGAGAAGTGTGGCACCAGCCGGGATCCAAAGGGCCACCTGAATCAAGAG                         GCTGGGCTTGTGCCAAGCTTGAATCCTCTTGTGAAGGAGTTTCTCAATGCT
genomic: ATGAGAAGTGTGGCACCAGCCGGGATCCAAAGGGCCACCTGAATCAAGAGgttggttata ... tgctgtgtagGCTGGGCTTGTGCCAAGCTTGAATCCTCTTGTGAAGGAGTTTCTCAATGCT
EST: gi|148961931|gb|EE012723.2|EE012723
EST:     ATGAGAAGTGTGGCACCAGCCGGGATCCAAAGGGCCACCTGAATCAAGAG                         GCTGGGCTTGTGCCAAGCTTGAATCTTCTTGTGAAGGAGTTTCTCAATGCT
genomic: ATGAGAAGTGTGGCACCAGCCGGGATCCAAAGGGCCACCTGAATCAAGAGgttggttata ... tgctgtgtagGCTGGGCTTGTGCCAAGCTTGAATCCTCTTGTGAAGGAGTTTCTCAATGCT
EST: gi|37388199|gb|CF631306.1|CF631306
EST:     ATGAGAAGTGTGGCACCAGCCGGGATCCAAAGGGCCACCTGAATCAAGAG                         GCTGGGCTTGTGCCAAGCTTGAATCCTCTTGTGAAGGAGTTTCTCAATGCT
genomic: ATGAGAAGTGTGGCACCAGCCGGGATCCAAAGGGCCACCTGAATCAAGAGgttggttata ... tgctgtgtagGCTGGGCTTGTGCCAAGCTTGAATCCTCTTGTGAAGGAGTTTCTCAATGCT
EST: gi|32846747|gb|CD986428.1|CD986428
EST:     ATGAGAAGTGTGGCACCAGCCGGGATCCAAAGGGCCACCTGAATCAAGAG                         GCTGGGCTTGTGCCAAGCTTGAATCCTCTTGTGAAGGAGTTTCTCAATGCT
genomic: ATGAGAAGTGTGGCACCAGCCGGGATCCAAAGGGCCACCTGAATCAAGAGgttggttata ... tgctgtgtagGCTGGGCTTGTGCCAAGCTTGAATCCTCTTGTGAAGGAGTTTCTCAATGCT
EST: gi|20513042|gb|BQ280228.1|BQ280228
EST:     ATAAGAAGTGTGGCACCAGCCGGGATCCAAAGGGCCACCTGAATCAAGAG                         GCTGGGCTTGTGCCAAGCTTGAATCCTCTTGTGAAGGAGTTTCTCAATGCT
genomic: ATGAGAAGTGTGGCACCAGCCGGGATCCAAAGGGCCACCTGAATCAAGAGgttggttata ... tgctgtgtagGCTGGGCTTGTGCCAAGCTTGAATCCTCTTGTGAAGGAGTTTCTCAATGCT
EST: gi|101386448|gb|EB815241.1|EB815241
EST:     CTGAATCAAGAG                         GCTGGGCTTGTGCCAAGCTTGAATCCTCTTGTGAAGGAGTTTCTCAATGCT
genomic: CTGAATCAAGAGgttggttata ... tgctgtgtagGCTGGGCTTGTGCCAAGCTTGAATCCTCTTGTGAAGGAGTTTCTCAATGCT
EST: gi|32916349|gb|CF021161.1|CF021161
EST:     ATGAGAAGTGTGGCACCAGCCGGGATCCAAAGGGCCACCTGAATCAAGAG                         GCTGGGCTTGTGCCAAGCTTGAATCCTCTTGTGAAGGAGTTTCTCAATGCT
genomic: ATGAGAAGTGTGGCACCAGCCGGGATCCAAAGGGCCACCTGAATCAAGAGgttggttata ... tgctgtgtagGCTGGGCTTGTGCCAAGCTTGAATCCTCTTGTGAAGGAGTTTCTCAATGCT
EST: gi|211497907|gb|FK991939.1|FK991939
EST:     ATGAGAAGTGTGGCACCAGCCGGGATCCAAAGGGCCACCTGAATCAAGAG                         GCTGGGCTTGTGCCAAGCTTGAATCCTCTTGTGAAGGAGTTTCTCAATGCT
genomic: ATGAGAAGTGTGGCACCAGCCGGGATCCAAAGGGCCACCTGAATCAAGAGgttggttata ... tgctgtgtagGCTGGGCTTGTGCCAAGCTTGAATCCTCTTGTGAAGGAGTTTCTCAATGCT
EST: gi|149096330|gb|EE182049.2|EE182049
EST:     ATGAGAAGTGTGGCACCAGCCGGGATCCAAAGGGCCACCTGAATCAAGAG                         GCTGGGCTTGTGCCAAGCTTGAATCCTCTTGTGAAGGAGTTTCTCAATGCT
genomic: ATGAGAAGTGTGGCACCAGCCGGGATCCAAAGGGCCACCTGAATCAAGAGgttggttata ... tgctgtgtagGCTGGGCTTGTGCCAAGCTTGAATCCTCTTGTGAAGGAGTTTCTCAATGCT
EST: gi|149044453|gb|EE047574.2|EE047574
EST:     ATGAGAAGTGTGGCACCAGCCGGGATCCAAAGGGCCACCTGAATCAAGAG                         GCTGGGCTTGTGCCAAGCTTGAATCCTCTTGTGAAGGAGTTTCT
genomic: ATGAGAAGTGTGGCACCAGCCGGGATCCAAAGGGCCACCTGAATCAAGAGgttggttata ... tgctgtgtagGCTGGGCTTGTGCCAAGCTTGAATCCTCTTGTGAAGGAGTTTCT
EST: gi|14244876|gb|BG842814.2|BG842814
EST:     ATGAGAAGTGTGGCACCAGCCGGGATCCAAAGGGCCACCTGAATCAAGAG                         GCTGGGCTTGTGCCAAGCTTGAATCCTCTTGTGAAGGAGTTTCTCAATGCT
genomic: ATGAGAAGTGTGGCACCAGCCGGGATCCAAAGGGCCACCTGAATCAAGAGgttggttata ... tgctgtgtagGCTGGGCTTGTGCCAAGCTTGAATCCTCTTGTGAAGGAGTTTCTCAATGCT
EST: gi|67024988|gb|CO453737.1|CO453737
EST:     ATGAGAAGTGTGGCACCAGCCGGGATCCAAAGGGCCACCTGAATCAAGAG                         GCTGGGCTTGTGCCAAGCTTGAATCCTCTTGTGAAGGAGTTTCTCAATGCT
genomic: ATGAGAAGTGTGGCACCAGCCGGGATCCAAAGGGCCACCTGAATCAAGAGgttggttata ... tgctgtgtagGCTGGGCTTGTGCCAAGCTTGAATCCTCTTGTGAAGGAGTTTCTCAATGCT
EST: gi|32846337|gb|CD986018.1|CD986018
EST:     ATGAGAAGTGTGGCACCAGCCGGGATCCAAAGGGCCACCTGAATCAAGAG                         GCTGGGCTTGTGCCAAGCTTGAATCCTCTTGTGAAGGAGTTTTTCAATGCT
genomic: ATGAGAAGTGTGGCACCAGCCGGGATCCAAAGGGCCACCTGAATCAAGAGgttggttata ... tgctgtgtagGCTGGGCTTGTGCCAAGCTTGAATCCTCTTGTGAAGGAGTTTCTCAATGCT
EST: gi|40336546|gb|CK370616.1|CK370616
EST:     ATGAGAAGTGTGCCACCAGCCGGGATCCAAAGGGCCACCTGAATCAAGAG                         GCTGGGCTTGTGCCAAGCTTGAATCCTCTTGTGAAGGAGTTTCTCAATGCT
genomic: ATGAGAAGTGTGGCACCAGCCGGGATCCAAAGGGCCACCTGAATCAAGAGgttggttata ... tgctgtgtagGCTGGGCTTGTGCCAAGCTTGAATCCTCTTGTGAAGGAGTTTCTCAATGCT
EST: gi|32934912|gb|CF039724.1|CF039724
EST:     ATCAG-AGTGTGGCACCAGCCGGGATCCAAAGGGCCACCTGAATCAAGAG                         GCTGGGCTTGTGCCAAGCTTGAATCCTCTTGTGAAGGAGTTTCTCAATGCT
genomic: ATGAGAAGTGTGGCACCAGCCGGGATCCAAAGGGCCACCTGAATCAAGAGgttggttata ... tgctgtgtagGCTGGGCTTGTGCCAAGCTTGAATCCTCTTGTGAAGGAGTTTCTCAATGCT
EST: gi|9254367|gb|BE344835.1|BE344835
EST:     ATGAGAAGTGTGGCACCAGCCGGGATCCAAAGGGCCACCTGAATCAAGAG                         GCTGGGCTTGTGCCAAGCTTGAATCCTCTTGTGAAGGAGTTTCTCAATGCT
genomic: ATGAGAAGTGTGGCACCAGCCGGGATCCAAAGGGCCACCTGAATCAAGAGgttggttata ... tgctgtgtagGCTGGGCTTGTGCCAAGCTTGAATCCTCTTGTGAAGGAGTTTCTCAATGCT
EST: gi|33101223|gb|CF061183.1|CF061183
EST:     ATGAGAAGTGTGGCACCAGCCGGGATCCAAAGGGCCACCTGAATCAAGAG                         GCTGGGCTTGTGCCAAGCTTGAATCCTCTTGTGAAGGAGTTTCTCAATGCT
genomic: ATGAGAAGTGTGGCACCAGCCGGGATCCAAAGGGCCACCTGAATCAAGAGgttggttata ... tgctgtgtagGCTGGGCTTGTGCCAAGCTTGAATCCTCTTGTGAAGGAGTTTCTCAATGCT
EST: gi|149096331|gb|EE182050.2|EE182050
EST:     ATGAGAAGTGTGGCACCAGCCGGGATCCAAAGGGCCACCTGAATCAAGAG                         GCTGGGCTTGTGCCAAGCTTGAATCCTCTTGTGAAGGAGTTTCTCAATGCT
genomic: ATGAGAAGTGTGGCACCAGCCGGGATCCAAAGGGCCACCTGAATCAAGAGgttggttata ... tgctgtgtagGCTGGGCTTGTGCCAAGCTTGAATCCTCTTGTGAAGGAGTTTCTCAATGCT
EST: gi|14244939|gb|BG842877.2|BG842877
EST:     ATGAGAAGTGTGGCACCAGCCGGGATCCAAAGGGCCACCTGAATCAAGAG                         GCTGGGCTTGTGCCAAGCTTGAATCCTCTTGTGAAGGAGTTTCTCAATGCT
genomic: ATGAGAAGTGTGGCACCAGCCGGGATCCAAAGGGCCACCTGAATCAAGAGgttggttata ... tgctgtgtagGCTGGGCTTGTGCCAAGCTTGAATCCTCTTGTGAAGGAGTTTCTCAATGCT
EST: gi|37393543|gb|CF634037.1|CF634037
EST:     ATGAGAAGTGTGCCACCAGCCGGGATCCAAAGGGCCACCTGAATCAAGAG                         GCTGGGCTTGTGCCAAGCTTGAATCCTCTTGTGAAGGAGTTTCTCAATGCT
genomic: ATGAGAAGTGTGGCACCAGCCGGGATCCAAAGGGCCACCTGAATCAAGAGgttggttata ... tgctgtgtagGCTGGGCTTGTGCCAAGCTTGAATCCTCTTGTGAAGGAGTTTCTCAATGCT
EST: gi|148955860|gb|EC901555.2|EC901555
EST:     ATGAGAAGTGTGGCACCAGCCGGGATCCAAAGGGCCACCTGAATCAAGAG                         GCTGGGCTTGTGCCCAGCTTGAATCCTCTTGTGAAGGAGTTTTCTCA-TGC
genomic: ATGAGAAGTGTGGCACCAGCCGGGATCCAAAGGGCCACCTGAATCAAGAGgttggttata ... tgctgtgtagGCTGGGCTTGTGCCAAGCTTGAATCCTCTTGTGAAGGAGTTT-CTCAATGC
EST: gi|21828690|gb|BQ703374.1|BQ703374
EST:     TGAATCAAGAG                         GCTGGGCTTGTGCCAAGCTTGAATCCTCTTGTGAAGGAGTTTCTCAATGCT
genomic: TGAATCAAGAGgttggttata ... tgctgtgtagGCTGGGCTTGTGCCAAGCTTGAATCCTCTTGTGAAGGAGTTTCTCAATGCT
EST: gi|60358667|gb|DN225640.1|DN225640
EST:     ATGAGAAGTGTGGCACCAGCCGGGATCCAAAGGGCCACCTGAATCAAGAG                         GCTGGGCTTGTGCCAAGCTTGAATCCTCTTGTGAAGGAGTTTCTCAATGCT
genomic: ATGAGAAGTGTGGCACCAGCCGGGATCCAAAGGGCCACCTGAATCAAGAGgttggttata ... tgctgtgtagGCTGGGCTTGTGCCAAGCTTGAATCCTCTTGTGAAGGAGTTTCTCAATGCT
EST: gi|213192265|gb|FM195988.1|FM195988
EST:     ATGAGAAGTGTGGCACCAGCCGGGATCCAAAGGGCCACCTGAATCAAGAG                         GCTGGGCTTGTGCCAAGCTTGAATCCTCTTGTGAAGGAGTTTCTCAATGCT
genomic: ATGAGAAGTGTGGCACCAGCCGGGATCCAAAGGGCCACCTGAATCAAGAGgttggttata ... tgctgtgtagGCTGGGCTTGTGCCAAGCTTGAATCCTCTTGTGAAGGAGTTTCTCAATGCT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 48 (upstream exon), 49 (downstream exon)
Score: 584

TGAAGATTATGATGGTGGCCGGGACTTGGATGACTTTGTCAAGTTCATTAATGAGAAGTGTGGCACCAGCCGGGATCCAAAGGGCCACCTGAATCAAGAGgttggttata ... tgctgtgtagGCTGGGCTTGTGCCAAGCTTGAATCCTCTTGTGAAGGAGTTTCTCAATGCTGCTGATGACAAGCGGAAGGAAGTCCTCTCTAAAATAGAAGAGGATGTTG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 587

TGAAGATTATGATGGTGGCCGGGACTTGGATGACTTTGTCAAGTTCATTAATGAGAAGTGTGGCACCAGCCGGGATCCAAAGGGCCACCTGAATCAAGAGgttggttata ... tgctgtgtagGCTGGGCTTGTGCCAAGCTTGAATCCTCTTGTGAAGGAGTTTCTCAATGCTGCTGATGACAAGCGGAAGGAAGTCCTCTCTAAAATAGAAGAGGATGTTG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 567

TGAAGATTATGATGGTGGCCGGGACTTGGATGACTTTGTCAAGTTCATTAATGAGAAGTGTGGCACCAGCCGGGATCCAAAGGGCCACCTGAATCAAGAGgttggttata ... tgctgtgtagGCTGGGCTTGTGCCAAGCTTGAATCCTCTTGTGAAGGAGTTTCTCAATGCTGCTGATGACAAGCGGAAGGAAGTCCTCTCTAAAATAGAAGAGGATGTTG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 1065

TGAAGATTATGATGGTGGCCGGGACTTGGATGACTTTGTCAAGTTCATTAATGAGAAGTGTGGCACCAGCCGGGATCCAAAGGGCCACCTGAATCAAGAGgttggttata ... tgctgtgtagGCTGGGCTTGTGCCAAGCTTGAATCCTCTTGTGAAGGAGTTTCTCAATGCTGCTGATGACAAGCGGAAGGAAGTCCTCTCTAAAATAGAAGAGGATGTTG


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TGAAGATTATGATGGTGGCCGGGACTTGGATGACTTTGTCAAGTTCATTAATGAGAAGTGTGGCACCAGCCGGGATCCAAAGGGCCACCTGAATCAAGAGgttggttataaagctaagcgaaatcgctttggaagcaagttgatgaattctggatctgatgcattctgttcatgtgttgctgtgtag

- - - - - - - - - - - - - - - - - - - - - - - - - -  AGAAGT