1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
CCTCCTGAAGTCTGGGACGGTGGCGTCGGGTTCGTGTCGAAGGAAATGATCCAGACTCATTGCCCAGCGCCTGCCGCCGACATTCAGgtaagcttttccggttactgaaagtattttgagggaacttggatgggggccatcagtttttgctcggtggaagtcagatcagttttccgttttcag
species | Zea mays |
transcript | GRMZM2G157263_T01 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: CGAAGGAAATGATCCAGACTCATTGCCCAGCGCCTGCCGCCGACATTCAG GTATTGCGATGTGGACCTCCTCCCATGAACAAAGCCATGGCCGCGCACCTGEST: gi|6056601|gb|AW091006.1|AW091006
genomic: CGAAGGAAATGATCCAGACTCATTGCCCAGCGCCTGCCGCCGACATTCAGgtaagctttt ... ccgttttcagGTATTGCGATGTGGACCTCCTCCCATGAACAAAGCCATGGCCGCGCACCTG
EST: CGAAGGAAATGATCCAGACTCATTGCCCAGCGCCTGCCGCCGACATTCAG GTATTGCGATGTGGGCCTCCTCCCATGAACAAAGCCATGGCCGCGCACCTGEST: gi|33101380|gb|CF061340.1|CF061340
genomic: CGAAGGAAATGATCCAGACTCATTGCCCAGCGCCTGCCGCCGACATTCAGgtaagctttt ... ccgttttcagGTATTGCGATGTGGACCTCCTCCCATGAACAAAGCCATGGCCGCGCACCTG
EST: GAAGGAAACGACCCAGACTCATTGCCCAGCGCCTGGCCGCCGACATTCAG GTATTGCGATGTGGACCTCCTCCCATGAACAAAGCCATGGCCGCGCACCTGEST: gi|6056591|gb|AW090996.1|AW090996
genomic: GAAGGAAATGATCCAGACTCATTGCCCAGCGCCTG-CCGCCGACATTCAGgtaagctttt ... ccgttttcagGTATTGCGATGTGGACCTCCTCCCATGAACAAAGCCATGGCCGCGCACCTG
EST: CGAAGGAAATGATCCAGACTCATTGCCCAGCGCCTGCCGCCGACATTCAG GTATTGCGATGTGGGCCTCCTCCCATGAACAAAGCCATGGCCGCGCACCTG
genomic: CGAAGGAAATGATCCAGACTCATTGCCCAGCGCCTGCCGCCGACATTCAGgtaagctttt ... ccgttttcagGTATTGCGATGTGGACCTCCTCCCATGAACAAAGCCATGGCCGCGCACCTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCTCCTGAAGTCTGGGACGGTGGCGTCGGGTTCGTGTCGAAGGAAATGATCCAGACTCATTGCCCAGCGCCTGCCGCCGACATTCAGgtaagcttttccggttactgaaagtattttgagggaacttggatgggggccatcagtttttgctcggtggaagtcagatcagttttccgttttcag
- - - - - - - - - - - - - - - - - - - AAGGAA