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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTCTAAAATCTAAAAGGTTGCTCGATGATATGGCTGCAAAAGGTGTTAAGTATGTAGATTGCTATGGAGTTGATAATGTATTGgtaagtacgtcctttatgctgttcatttcatggagccttcctttttttattgtcattaaatatttgatttatttgatacag

Basic information

species Zea mays
transcript GRMZM2G155729_T03
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G155729_T01 (Zea mays), 5'ss of exon 9
lower sequence: LOC_Os08g10600.1 (Oryza sativa), 5'ss of exon 9
CTCTAAAATCTAAAAGGTTGCTCGATGATATGGCTGCAAAAGGTGTTAAGTATGTAGATTGCTATGGAGTTGATAATGTATTGgtaagtacgtcctttat-------gctgttcatt-tcatggagccttcctttttttattgtcattaaatatttgatttatttgatacag---------------------
||||||||||| |||||||||| || |||||||||| || |||||| || ||||||||||||||||||||||| ||||||||||| |||||    ||| |         | |  ||| | |||| ||||  || |    ||  |  |||| |  |    || |||   | |                      
CTCTAAAATCTCAAAGGTTGCTGGACGATATGGCTGGAAGAGGTGTGAAATATGTAGATTGCTATGGAGTTGACAATGTATTGgtgagtacactttttttttaaaaaaatatatattgtaatggggcctctctctccccatc-tgtttaattgatctccttttttaccagaataatcaatctctttgatacag

upper sequence: GRMZM2G155729_T01 (Zea mays), 5'ss of exon 9
lower sequence: GLYMA08G09170.1 (Glycine max), 5'ss of exon 9
CTCTAAAATCTAAAAGGTTGCTCGATGATATGGCTGCAAAAGGTGTTAAGTATGTAGATTGCTATGGAGTTGATAATGTATTGgtaagt-acgtcctttatgc---tgttcatttcatggagc--cttcctttttttattgtcattaaatattt---gatttatttgatacag------------
|||| |||||||  |  ||  | || ||||||||  |||||||  |||||||| | ||||||||||||||||| |||| | |||||| | |  | |||  | |   | ||  | ||||  | |   || | |  |   || ||| |   |||||   ||  ||||   ||               
CTCTGAAATCTACCAAATTATTGGAGGATATGGCCTCAAAAGGAATTAAGTATATTGATTGCTATGGAGTTGACAATGCACTGgtaatttattttcttgcttcctatttttctctcattaatcaattttcctggtcagttatcacttcttatttaaagaaatattgattaggatttgtgaaacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|74243750|gb|DT651664.1|DT651664
EST:     CTGCAAAAGGTGTTAAGTATGTAGATTGCTATGGAGTTGATAATGTATTG                         GTCCGTGTTGCAGATCCAACATTCCTAGGATACTTCATTGACAGAGGTGTA
genomic: CTGCAAAAGGTGTTAAGTATGTAGATTGCTATGGAGTTGATAATGTATTGgtaagtacgt ... tttgatacagGTCCGTGTTGCAGATCCAACATTCCTAGGATACTTCATTGACAGAGGTGTA
EST: gi|211407698|gb|FL252163.1|FL252163
EST:     CTGCAAAAGGTGTTAAGTATGTAGATTGCTATGGAGTTGATAATGTATTG                         GTCCGTGTTGCAGATCCAACATTCCTAGGATACTTCATTGACAGAGGTGTA
genomic: CTGCAAAAGGTGTTAAGTATGTAGATTGCTATGGAGTTGATAATGTATTGgtaagtacgt ... tttgatacagGTCCGTGTTGCAGATCCAACATTCCTAGGATACTTCATTGACAGAGGTGTA
EST: gi|211407699|gb|FL252164.1|FL252164
EST:     CTGCAAAAGGTGTTAAGTATGTAGATTGCTATGGAGTTGATAATGTATTG                         GTCCGTGTTGCAGATCCAACATTCCTAGGATACTTCATTGACAGAGGTGTA
genomic: CTGCAAAAGGTGTTAAGTATGTAGATTGCTATGGAGTTGATAATGTATTGgtaagtacgt ... tttgatacagGTCCGTGTTGCAGATCCAACATTCCTAGGATACTTCATTGACAGAGGTGTA