Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCAGCTTGGTACACACCCACCTGATGTTTGTGTTGGAACACCTTGTTGGATGGCTCCAGAGGTTGTTAAGGCCATGCATGAAAAACACCACTATGGACTGgtaagaatttgttagataattatggttttgttttattcatgattttggctctgttattctgcatgcttgttggtgagtttggttgttattttgttctcag...

Basic information

species Zea mays
transcript GRMZM2G155312_T01
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G155312_T01 (Zea mays), 5'ss of exon 8
lower sequence: LOC_Os03g53250.1 (Oryza sativa), 5'ss of exon 6
TCAGCTTGGTACACACCCACCTGATGTTTGTGTTGGAACACCTTGTTGGATGGCTCCAGAGGTTGTTAAGGCCATGCATGAAAAACACCACTATGGACTGgtaagaatttgttagataattatggttttgttttattcatgattttggctctgttattctgcatgcttgttggtgagtttggttgttattttgttctcag---
||| ||||| ||| | |||||  ||||||||||||| ||||| || |||||||||||||||||| ||   |||||||  || ||| |||| |||||||||||| |  ||| ||  | | || ||  ||  |  |||  |||    | | |   || |||||||| || | ||  ||       || |      || | |    
TCACCTTGGGACATATCCACCCAATGTTTGTGTTGGTACACCATGCTGGATGGCTCCAGAGGTTCTTCGTGCCATGCGAGACAAAAACCAATATGGACTGgtatgcttttattccacagttctgtcttgttgctatcaatg---ctagtttaattgttctgcattctggctgaggaaaccaaatgctgcaccattgttattat

upper sequence: GRMZM2G155312_T01 (Zea mays), 5'ss of exon 8
lower sequence: GLYMA10G38810.1 (Glycine max), 5'ss of exon 9
TCAGCTTGGTACACACCCACCTGATGTTTGTGTTGGAACACCTTGTTGGATGGCTCCAGAGGTTGTTAAGGCCATGCATGAAAAACACCACTATGGACTGgtaagaatttgttagataattatggttttgttttattcatgattttggctctgttattctgcatgcttgttggtgagtttggttgttattttgttctcag--------
|||    || ||||  || ||   | | ||||||||||||||| | |||||||||||||||||| |   | | ||| || ||||| ||  ||||||| ||||||||   | ||   || | ||    |   ||||||     |||    | | | |     ||   |   |  || || |   ||  ||||  || |||         
TCATGCGGGAACACCTCCTCCCTGTATATGTGTTGGAACACCTCGGTGGATGGCTCCAGAGGTTATGCGGACTATGTATAAAAAAAACTCCTATGGATTGgtaagatcctcttcc-tactgatcagcta--tttattttgagtttgaaatatatga----acaatgtcactaatg-gtgttactgacatttaattttcaaaagttaaa

upper sequence: GRMZM2G155312_T01 (Zea mays), 5'ss of exon 8
lower sequence: Vv05s0020g04180.t01 (Vitis vinifera), 5'ss of exon 9
TCAGCTTGGTACACACCCACCTGATGTTTGTGTTGGAACACCTTGTTGGATGGCTCCAGAGGTTGTTAAGGCCATGCATGAAAAACACCACTATGGACTGgtaagaatttgttagataattatggttttgttttattcatgattttggctctgttattctgcatgcttgttggtgagtttggttgttattttgttctcag---
 ||  |||| | ||  ||||||||||||||||||||||||||| |||||||||| || |||||  |   ||| |||||| ||    |    ||||| |||||||  |||| | |   | ||  | ||||    |||  ||   | |   | | |   | |   ||  | |   |   | |   | |     |||    |    
ACACATTGGAATACCTCCACCTGATGTTTGTGTTGGAACACCTCGTTGGATGGCACCTGAGGTGCTGCGGGCAATGCATAAACGGGAGATATATGGGCTGgtaa--atttctcatcca-ttgagtttttaaactatctatctatctatatgtatgtatgtatctgtatatatatatatatatatatatacctgtgtaaaatta

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211106603|gb|FL402533.1|FL402533
EST:     TGGCTCCAGAGGTTGTTAAGGCCATGCATGAAAAACACCACTATGGACTG                         GAAATAGATATCTGGTCATTTGGATGTTTTTTATTGGAGATGCTTACGCTT
genomic: TGGCTCCAGAGGTTGTTAAGGCCATGCATGAAAAACACCACTATGGACTGgtaagaattt ... ttggatgcagGAAATAGATATCTGGTCATTTGGATGTTTTTTATTGGAGATGCTTACGCTT
EST: gi|91052138|gb|EB162556.1|EB162556
EST:     TGGCTCCAGAGGTTGTTAAGGCCATGCATGAAAAACACCACTATGGACTG                         GAAATAGATATCTGGTCATTTGGATGTTTTTTATTGGAGATGCTTACGCTT
genomic: TGGCTCCAGAGGTTGTTAAGGCCATGCATGAAAAACACCACTATGGACTGgtaagaattt ... ttggatgcagGAAATAGATATCTGGTCATTTGGATGTTTTTTATTGGAGATGCTTACGCTT
EST: gi|211454500|gb|FL406359.1|FL406359
EST:     TGGCTCCAGAGGTTGTTAAGGCCATGCATGAAAAACACCACTATGGACTG                         GAAATAGATATCTGGTCATTTGGATGTTTTTTATTGGAGATGCTTACGCTT
genomic: TGGCTCCAGAGGTTGTTAAGGCCATGCATGAAAAACACCACTATGGACTGgtaagaattt ... ttggatgcagGAAATAGATATCTGGTCATTTGGATGTTTTTTATTGGAGATGCTTACGCTT
EST: gi|211521523|gb|FL409909.1|FL409909
EST:     TGGCTCCAGAGGTTGTTAAGGCCATGCATGAAAAACACCACTATGGACTG                         GAAATAGATATCTGGTCATTTGGATGTTTTTTATTGGAGATGCTTACGCTT
genomic: TGGCTCCAGAGGTTGTTAAGGCCATGCATGAAAAACACCACTATGGACTGgtaagaattt ... ttggatgcagGAAATAGATATCTGGTCATTTGGATGTTTTTTATTGGAGATGCTTACGCTT
EST: gi|67010793|gb|CO439542.1|CO439542
EST:     GGCCATGCATGTATAAACACCACTATGGNACTGG                         GAAATACATATCTGGTCATTTGGATGTTTTTTATTGGAGATGCTTACGCT
genomic: GGCCATGCATG-AAAAACACCACTATGG-ACT-Ggtaagaattt ... ttggatgcagGAAATAGATATCTGGTCATTTGGATGTTTTTTATTGGAGATGCTTACGCT