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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAACACCTGTGAGGACTCGCTCCTCGCCGCACCTATCATCCTTGATCTGGTGCTCTTGGCTGAGCTCAGCACCAGGATCCAGCTGAAAGCTGAGGGAGAGgtaagagccccccaagtgattaacctgaaagcacgctgcacgctaggtgatatagcacttttaataccttctggtgtctctcttatgcag

Basic information

species Zea mays
transcript GRMZM2G155242_T01
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G155242_T01 (Zea mays), 5'ss of exon 8
lower sequence: LOC_Os03g09250.2 (Oryza sativa), 5'ss of exon 8
CAACACCTGTGAGGACTCGCTCCTCGCCGCACCTATCATCCTTGATCTGGTGCTCTTGGCTGAGCTCAGCACCAGGATCCAGCTGAAAGCTGAGGGAGAGgtaagagccccccaagtgattaacctgaaagcacgctgcac-gctaggtgatatagcacttttaataccttctggtgtctctcttatgcag----------------------
|||||||||||||||||| ||||| ||||| || ||||| ||||||||||||||| | || ||||||||||||||||| ||||||||||| ||||| ||||||||||  |    |  || | |  | ||   || ||   | |||  |  || |  |||  ||  | ||  |     |  || |  ||  |                      
CAACACCTGTGAGGACTCACTCCTTGCCGCGCCGATCATTCTTGATCTGGTGCTCCTTGCCGAGCTCAGCACCAGGATTCAGCTGAAAGCCGAGGGGGAGgtaagagttct--gatggactgagatcaattgactctctgctgctctgcaat-tgccaccctttttgccagcaaaattgactatgttgttgtttcacttgttatcctgtgcag

upper sequence: GRMZM2G155242_T01 (Zea mays), 5'ss of exon 8
lower sequence: AT4G39800.1 (Arabidopsis thaliana), 5'ss of exon 8
CAACACCTGTGAGGACTCGCTCCTCGCCGCACCTATCATCCTTGATCTGGTGCTCTTGGCTGAGCTCAGCACCAGGATCCAGCTGAAAGCTGAGGGAGAGgtaagagccccccaagtgattaacctgaaagcacgctgcacgctaggtgatatagcacttttaataccttctggtgtctctcttatgcag
||| ||||| |||||||| ||| | || || || |||||| | ||||| || ||| | || ||||||||||||||||||||| | ||| | |||||||||||  |      |  |||   |    |    |    ||      |   ||| |  ||  |||| ||   || ||     ||| ||  ||||
CAATACCTGCGAGGACTCTCTCTTAGCTGCTCCAATCATCTTGGATCTTGTTCTCCTCGCGGAGCTCAGCACCAGGATCCAGTTCAAATCCGAGGGAGAGgttcgtcagttcacagtacatgttattttgg-gttctctgttttcactga-accgcggttttgatg--ttttgaaacatctttttggcag

upper sequence: GRMZM2G155242_T01 (Zea mays), 5'ss of exon 8
lower sequence: Vv07s0031g00920.t01 (Vitis vinifera), 5'ss of exon 8
CAACACCTGTGAGGACTCGCTCCTCGCCGCACCTATCATCCTTGATCTGGTGCTCTTGGCTGAGCTCAGCACCAGGATCCAGCTGAAAGCTGAGGGAGAGgtaagagccccccaagtgattaacctgaaagcacgctgc-acgctaggtgatat-agcacttttaataccttctggtgt-ctctcttatgcag
||||||||| |||||||| ||| | || || || |||||| | ||| |||| ||  | ||||||||||||||| | |||||||| |||||||| ||||||||  |    |  |        | ||| |  | || ||    |  | | |  ||  | ||| |  |||   |  | |  |  ||  || |||||
CAACACCTGCGAGGACTCACTCTTAGCTGCTCCCATCATCTTGGATTTGGTCCTTCTTGCTGAGCTCAGCACCCGCATCCAGCTCAAAGCTGAAGGAGAGgtctgttttcttctg-----catccttatgggaccctcttgctttggtttttaccatcacatggaatgattcataggatgttcaattttgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31352226|gb|CD436583.1|CD436583
EST:     TGCTCTTGGCTGAGCTCAGCACCAGGATCCAGCTGAAAGCTGAGGGAGAG                         GACAAATTCCACTCCTTCCACCCGGTGGCCACCATCCTGAGCTACCTCACC
genomic: TGCTCTTGGCTGAGCTCAGCACCAGGATCCAGCTGAAAGCTGAGGGAGAGgtaagagccc ... tcttatgcagGACAAATTCCACTCCTTCCACCCGGTGGCCACCATCCTGAGCTACCTCACC
EST: gi|31362702|gb|CD447059.1|CD447059
EST:     TGCTCTTGGCTGAGCTCAGCACCAGGATCCAGCTGAAAGCTGAGGGAGAG                         GACAAATTCCACTCCTTCCACCCGGTGGCCACCATCCTGAGCTACCTCACC
genomic: TGCTCTTGGCTGAGCTCAGCACCAGGATCCAGCTGAAAGCTGAGGGAGAGgtaagagccc ... tcttatgcagGACAAATTCCACTCCTTCCACCCGGTGGCCACCATCCTGAGCTACCTCACC
EST: gi|24768785|gb|CA403914.1|CA403914
EST:     TGCTCTTGGCTGAGCTCAGCACCAGGATCCAGCTGAAAGCTGAGGGAGAG                         GACAAATTCCACTCCTTCCACCCGGTGGCCACCATCCTGAGCTACCTCACC
genomic: TGCTCTTGGCTGAGCTCAGCACCAGGATCCAGCTGAAAGCTGAGGGAGAGgtaagagccc ... tcttatgcagGACAAATTCCACTCCTTCCACCCGGTGGCCACCATCCTGAGCTACCTCACC
EST: gi|5069926|gb|AI737891.1|AI737891
EST:     TGCTCTTGGCTGAGCTCAGCACCAGGATCCAGCTGAAAGCTGAGGGAGAG                         GACAAATTCCACTCCTTCCACCCGGTGGCCACCATCCTGAGCTACCTCACC
genomic: TGCTCTTGGCTGAGCTCAGCACCAGGATCCAGCTGAAAGCTGAGGGAGAGgtaagagccc ... tcttatgcagGACAAATTCCACTCCTTCCACCCGGTGGCCACCATCCTGAGCTACCTCACC
EST: gi|5108056|gb|AI739769.1|AI739769
EST:     TGCTCTTGGCTGAGCTCAGCACCAGGATCCAGCTGAAAACTGAGGGAGAG                         GACAAATTCCACTCCTTCCACCCGGTGGCCACCATCCTGAGCTACCTCACC
genomic: TGCTCTTGGCTGAGCTCAGCACCAGGATCCAGCTGAAAGCTGAGGGAGAGgtaagagccc ... tcttatgcagGACAAATTCCACTCCTTCCACCCGGTGGCCACCATCCTGAGCTACCTCACC
EST: gi|5108085|gb|AI739798.1|AI739798
EST:     TGCTCTTGGCTGAGCTCAGCACCAGGATCCAGCTGAAAGCTGAGGGAGAG                         GACAAATTCCACTCCTTCCAACCGGTGGCCACCATCCTGAGCTACCTCACC
genomic: TGCTCTTGGCTGAGCTCAGCACCAGGATCCAGCTGAAAGCTGAGGGAGAGgtaagagccc ... tcttatgcagGACAAATTCCACTCCTTCCACCCGGTGGCCACCATCCTGAGCTACCTCACC
EST: gi|24768757|gb|CA403886.1|CA403886
EST:     TGCTCTTGGCTGAGCTCAGCACCAGGATCCAGCTGAAAGCTGAGGGAGAG                         GACAAATTCCACTCCTTCCACCCGGTGGCCACCATCCTGAGCTACCTCACC
genomic: TGCTCTTGGCTGAGCTCAGCACCAGGATCCAGCTGAAAGCTGAGGGAGAGgtaagagccc ... tcttatgcagGACAAATTCCACTCCTTCCACCCGGTGGCCACCATCCTGAGCTACCTCACC
EST: gi|5055740|gb|AI734627.1|AI734627
EST:     TGCTCTTGGCTGAGCTCAGCACCAGGATCCAGCTGAAAGCTGAGGGAGAG                         GACAAATTCCACTCCTTCCACCCGGTGGCCACCATCCTGAGCTACCTCACC
genomic: TGCTCTTGGCTGAGCTCAGCACCAGGATCCAGCTGAAAGCTGAGGGAGAGgtaagagccc ... tcttatgcagGACAAATTCCACTCCTTCCACCCGGTGGCCACCATCCTGAGCTACCTCACC
EST: gi|5058986|gb|AI737462.1|AI737462
EST:     CAGCACCAGGATCCAGCTGAAAGCTGAGGGAAAG                         GACAAATTCCACTCCTTCCACCCGGTGGCCCCCATCCTGAGCTGCCTCACC
genomic: CAGCACCAGGATCCAGCTGAAAGCTGAGGGAGAGgtaagagccc ... tcttatgcagGACAAATTCCACTCCTTCCACCCGGTGGCCACCATCCTGAGCTACCTCACC
EST: gi|24765626|gb|CA400785.1|CA400785
EST:     TGCTCTTGGCTGAGCTCAGCACCAGGATCCAGCTGAAAGCTGAGGGAGAG                         GACAAATTCCACTCCTTCCACCCGGTGGCCACCATCCTGAGCTACCTCACC
genomic: TGCTCTTGGCTGAGCTCAGCACCAGGATCCAGCTGAAAGCTGAGGGAGAGgtaagagccc ... tcttatgcagGACAAATTCCACTCCTTCCACCCGGTGGCCACCATCCTGAGCTACCTCACC
EST: gi|24763844|gb|CA399015.1|CA399015
EST:     TGCTCTTGGCTGAGCTCAGCACCAGGATCCAGCTGAAAGCTGAGGGAGAG                         GACAAATTCCACTCCTTCCACCCGGTGGCCACCATCCTGAGCTACCTCACC
genomic: TGCTCTTGGCTGAGCTCAGCACCAGGATCCAGCTGAAAGCTGAGGGAGAGgtaagagccc ... tcttatgcagGACAAATTCCACTCCTTCCACCCGGTGGCCACCATCCTGAGCTACCTCACC
EST: gi|5080959|gb|AI738221.1|AI738221
EST:     TGCTCTTGGCTGAGCTCAGCACCAGGATCCAGCTGAAAGCTGAGGGAGAG                         GACAAATTCCACTCCTTCCACCCGGTGGCCACCATCCTGAGCTACCTCACC
genomic: TGCTCTTGGCTGAGCTCAGCACCAGGATCCAGCTGAAAGCTGAGGGAGAGgtaagagccc ... tcttatgcagGACAAATTCCACTCCTTCCACCCGGTGGCCACCATCCTGAGCTACCTCACC
EST: gi|5058910|gb|AI737386.1|AI737386
EST:     TGCTCTTGGCTGAGCTCAGCACCAGGATCCAGCTGAAAGCTGAGGGAGAG                         GACAAATTCCACTCCTTCCACCCGGTGGCCACCATCCTGAGCTACCTCACC
genomic: TGCTCTTGGCTGAGCTCAGCACCAGGATCCAGCTGAAAGCTGAGGGAGAGgtaagagccc ... tcttatgcagGACAAATTCCACTCCTTCCACCCGGTGGCCACCATCCTGAGCTACCTCACC
EST: gi|5055451|gb|AI734338.1|AI734338
EST:     TGCTCTTGGCTGAGCTCAGCACCAGGATCCAGCTGAAAGCTGAGGGAGAG                         GACAAATTCCACTCCTTCCACCCGGTGGCCACCATCCTGAGCTACCTCACC
genomic: TGCTCTTGGCTGAGCTCAGCACCAGGATCCAGCTGAAAGCTGAGGGAGAGgtaagagccc ... tcttatgcagGACAAATTCCACTCCTTCCACCCGGTGGCCACCATCCTGAGCTACCTCACC
EST: gi|211029044|gb|FL245290.1|FL245290
EST:     TGCTCTTGGCTGAGCTCAGCACCAGGATCCAGCTGAAAGCTGAGGGAGAG                         GATAAATTCCACTCCTTCCACCCGGTGGCCACCATCCTGAGCTACCTCACC
genomic: TGCTCTTGGCTGAGCTCAGCACCAGGATCCAGCTGAAAGCTGAGGGAGAGgtaagagccc ... tcttatgcagGACAAATTCCACTCCTTCCACCCGGTGGCCACCATCCTGAGCTACCTCACC
EST: gi|24767240|gb|CA402384.1|CA402384
EST:     TGCTCTTGGCTGAGCTCAGCACCAGGATCCAGCTGAAAGCTGAGGGAGAG                         GACAAATTCCACTCCTTCCACCCGGTGGCCACCATCCTGAGCTACCTCACC
genomic: TGCTCTTGGCTGAGCTCAGCACCAGGATCCAGCTGAAAGCTGAGGGAGAGgtaagagccc ... tcttatgcagGACAAATTCCACTCCTTCCACCCGGTGGCCACCATCCTGAGCTACCTCACC
EST: gi|5030583|gb|AI714777.1|AI714777
EST:     GCTCTTGGCTGAGCTCAGCACCAGGATNCCAGCTGAAAGCTGAGGGAGAG                         GACAAATTCCACTCCTTCCACCCGGTGGCCACCATCCTGAGCTACCTCACC
genomic: GCTCTTGGCTGAGCTCAGCACCAGGAT-CCAGCTGAAAGCTGAGGGAGAGgtaagagccc ... tcttatgcagGACAAATTCCACTCCTTCCACCCGGTGGCCACCATCCTGAGCTACCTCACC
EST: gi|78021234|gb|DV489621.1|DV489621
EST:     CTCAGCACCAGGATCCAGTTGAAAGCTGAGGGTGAG                         GACAAATTCCACTCCTTCCACCCGGTGGCCACCATCCTGAGCTACCTCACC
genomic: CTCAGCACCAGGATCCAGCTGAAAGCTGAGGGAGAGgtaagagccc ... tcttatgcagGACAAATTCCACTCCTTCCACCCGGTGGCCACCATCCTGAGCTACCTCACC
EST: gi|5030749|gb|AI714943.1|AI714943
EST:     TGCTCTTGGNTGAGCTCAGCACCAGGATCCAGCTGAAAGCTGAGGGAGAG                         GACAAATTCCACTCCTTCCACCCGGTGGCCACCATCCTGAGCTACCTCACC
genomic: TGCTCTTGGCTGAGCTCAGCACCAGGATCCAGCTGAAAGCTGAGGGAGAGgtaagagccc ... tcttatgcagGACAAATTCCACTCCTTCCACCCGGTGGCCACCATCCTGAGCTACCTCACC
EST: gi|211414409|gb|FL441882.1|FL441882
EST:     TGCTCTTGGCTGAGCTCAGCACCAGGATCCAGCTGAAAGCTGAGGGAGAG                         GACAAATTCCACTCCTTCCACCCGGTGGCCACCATCCTGAGCTACCTCACC
genomic: TGCTCTTGGCTGAGCTCAGCACCAGGATCCAGCTGAAAGCTGAGGGAGAGgtaagagccc ... tcttatgcagGACAAATTCCACTCCTTCCACCCGGTGGCCACCATCCTGAGCTACCTCACC
EST: gi|6056859|gb|AW091264.1|AW091264
EST:     TGCTCTTGGCTGAGCTCAGCACCAGGATCCAGCTGAAAGCTGAGGGAGAG                         GACAAATTCCACTCCTTCCACCCGGTGGCCACCATCCTGAGCTACCTCACC
genomic: TGCTCTTGGCTGAGCTCAGCACCAGGATCCAGCTGAAAGCTGAGGGAGAGgtaagagccc ... tcttatgcagGACAAATTCCACTCCTTCCACCCGGTGGCCACCATCCTGAGCTACCTCACC
EST: gi|4938776|gb|AI691185.1|AI691185
EST:     TGCTCTTGGCTGAGCTCAGCACCAGGATCCAGCTGAAAGCTGAGGGAGAG                         GACAAATTCCACTCCTTCCACCCGGTGGCCACCATCCTGAGCTACCTCACC
genomic: TGCTCTTGGCTGAGCTCAGCACCAGGATCCAGCTGAAAGCTGAGGGAGAGgtaagagccc ... tcttatgcagGACAAATTCCACTCCTTCCACCCGGTGGCCACCATCCTGAGCTACCTCACC
EST: gi|31361662|gb|CD446019.1|CD446019
EST:     TGCTCTTGGCTGAGCTCAGCACCAGGATCCAGCTGAAAGCTGAGGGAGAG                         GACAAATTCCACTCCTTCCACCCGGTGGCCACCATCCTGAGCTACCTCACC
genomic: TGCTCTTGGCTGAGCTCAGCACCAGGATCCAGCTGAAAGCTGAGGGAGAGgtaagagccc ... tcttatgcagGACAAATTCCACTCCTTCCACCCGGTGGCCACCATCCTGAGCTACCTCACC
EST: gi|24766339|gb|CA401493.1|CA401493
EST:     TGCTCTTGGCTGAGCTCAGCACCAGGATCCAGCTGAAAGCTGAGGGAGAG                         GCCAAATTCCACTCCTTCCACCCGGTGGCCACCATCCTGAGCTACCTCACC
genomic: TGCTCTTGGCTGAGCTCAGCACCAGGATCCAGCTGAAAGCTGAGGGAGAGgtaagagccc ... tcttatgcagGACAAATTCCACTCCTTCCACCCGGTGGCCACCATCCTGAGCTACCTCACC
EST: gi|6021817|gb|AW066745.1|AW066745
EST:     TGCTCTTGGCTGAGCTCAGCACCAGGATCCAGCTGAAAGCTGAGGGAGAG                         GACAAATTCCACTCCTTCCACCCGGTGGCCACCATCCTGAGCTACCTCACC
genomic: TGCTCTTGGCTGAGCTCAGCACCAGGATCCAGCTGAAAGCTGAGGGAGAGgtaagagccc ... tcttatgcagGACAAATTCCACTCCTTCCACCCGGTGGCCACCATCCTGAGCTACCTCACC
EST: gi|148934897|gb|EC878943.2|EC878943
EST:     TGCTCTTGGCTGAGCTCAGCACCAGGATCCAGCTGAAAGCTGAGGGAGAG                         GACAAATTCCACTCCTTCCACCCGGTGGCCACCATCCTGAGCTACCTCACC
genomic: TGCTCTTGGCTGAGCTCAGCACCAGGATCCAGCTGAAAGCTGAGGGAGAGgtaagagccc ... tcttatgcagGACAAATTCCACTCCTTCCACCCGGTGGCCACCATCCTGAGCTACCTCACC
EST: gi|37380822|gb|CF627249.1|CF627249
EST:     TGCTCTTGGCTGAGCTCAGCACCAGGATCCAGCTGAAAGCTGAGGGAGAG                         GACAAATTCCACTCCTTCCACCCGGTGGCCACCATCCTGAGCTACCTCACC
genomic: TGCTCTTGGCTGAGCTCAGCACCAGGATCCAGCTGAAAGCTGAGGGAGAGgtaagagccc ... tcttatgcagGACAAATTCCACTCCTTCCACCCGGTGGCCACCATCCTGAGCTACCTCACC
EST: gi|211029039|gb|FL245285.1|FL245285
EST:     TGCTCTTGGCTGAGCTCAGCACCAGGATCCAGCTGAAAGCTGAGGGAGAG                         GACAAATTCCACTCCTTCCACCCGGTGGCCACCATCCTGAGCTACCTCACC
genomic: TGCTCTTGGCTGAGCTCAGCACCAGGATCCAGCTGAAAGCTGAGGGAGAGgtaagagccc ... tcttatgcagGACAAATTCCACTCCTTCCACCCGGTGGCCACCATCCTGAGCTACCTCACC
EST: gi|4804284|gb|AI666150.1|AI666150
EST:     TGCTCTTGGCTGAGCTCAGCACCAGGATCCAGCTGAAAGCTGAGGGAGAG                         GACAAATTCCACTCCTTCCACCCGGTGGCCACCATCCTGAGCTACCTCACC
genomic: TGCTCTTGGCTGAGCTCAGCACCAGGATCCAGCTGAAAGCTGAGGGAGAGgtaagagccc ... tcttatgcagGACAAATTCCACTCCTTCCACCCGGTGGCCACCATCCTGAGCTACCTCACC
EST: gi|4314770|gb|AI444773.2|AI444773
EST:     TGCTCTTGGCTGAGCTCAGCACCAGGATCCAGCTGAAAGCTGAGGGAGAG                         GACAAATTCCACTCCTTCCACCCGGTGGCCACCATCCTGAGCTACCTCACC
genomic: TGCTCTTGGCTGAGCTCAGCACCAGGATCCAGCTGAAAGCTGAGGGAGAGgtaagagccc ... tcttatgcagGACAAATTCCACTCCTTCCACCCGGTGGCCACCATCCTGAGCTACCTCACC
EST: gi|20208400|gb|BQ134489.1|BQ134489
EST:     TGCTCTTGGCTGAGCTCAGCACCAGGATCCAGCTGAAAGCTGAGGGAGAG                         GACAAATTCCACTCCTTCCACCCGGTGGCCACCATCCTGAGCTACCTCACC
genomic: TGCTCTTGGCTGAGCTCAGCACCAGGATCCAGCTGAAAGCTGAGGGAGAGgtaagagccc ... tcttatgcagGACAAATTCCACTCCTTCCACCCGGTGGCCACCATCCTGAGCTACCTCACC
EST: gi|194716969|gb|FK934128.1|FK934128
EST:     TGCTCTTGGCTGAGCTCAGCACCAGGATCCAGCTGAAAGCTGAGGGAGAG                         GACAAATTCCACTCCTTCCACCCGGTGGCCACCATCCTGAGCTACCTCACC
genomic: TGCTCTTGGCTGAGCTCAGCACCAGGATCCAGCTGAAAGCTGAGGGAGAGgtaagagccc ... tcttatgcagGACAAATTCCACTCCTTCCACCCGGTGGCCACCATCCTGAGCTACCTCACC
EST: gi|67014060|gb|CO442809.1|CO442809
EST:     TGCTCTTGGCTGAGCTCAGCACCAGGATCCAGCTGAAAGCTGAGGGAGAG                         GACAAATTCCACTCCTTCCACCCGGTGGCCACCATCCTGAGCTACCTCACC
genomic: TGCTCTTGGCTGAGCTCAGCACCAGGATCCAGCTGAAAGCTGAGGGAGAGgtaagagccc ... tcttatgcagGACAAATTCCACTCCTTCCACCCGGTGGCCACCATCCTGAGCTACCTCACC
EST: gi|211032314|gb|FK948195.1|FK948195
EST:     TGCTCCTGGCTGAGCTCAGCACCAGGATCCAGCTGAAAGCTGAGGGAGAG                         GACAAATTCCACTCCTTCCACCCGGTGGCCACCATCCTGAGCTACCTCACC
genomic: TGCTCTTGGCTGAGCTCAGCACCAGGATCCAGCTGAAAGCTGAGGGAGAGgtaagagccc ... tcttatgcagGACAAATTCCACTCCTTCCACCCGGTGGCCACCATCCTGAGCTACCTCACC
EST: gi|14203207|gb|BG836884.1|BG836884
EST:     TGCTCTTGGCTGAGCTCAGCACCAYGATCCAGCTGAAAGCTGAGGGAGAG                         GACAAATTCAACTCCTTCCACCCGGTGGCCACCATCCTGYGCTKCCTCACC
genomic: TGCTCTTGGCTGAGCTCAGCACCAGGATCCAGCTGAAAGCTGAGGGAGAGgtaagagccc ... tcttatgcagGACAAATTCCACTCCTTCCACCCGGTGGCCACCATCCTGAGCTACCTCACC
EST: gi|24763482|gb|CA398657.1|CA398657
EST:     TGCTCTTGGCTGAGCTCAGCACCAGGATCCAGCTGAAAGCTGAGGGAGAG                         GACAAATTCCACTCCTTCCACCCGGTGGCCACCATCCTGAGCTACCTCACC
genomic: TGCTCTTGGCTGAGCTCAGCACCAGGATCCAGCTGAAAGCTGAGGGAGAGgtaagagccc ... tcttatgcagGACAAATTCCACTCCTTCCACCCGGTGGCCACCATCCTGAGCTACCTCACC
EST: gi|24766267|gb|CA401422.1|CA401422
EST:     TGCTCTTGGCTGAGCTCAGCACCAGGATCCAGCTGAAAGCTGAGGGAGAG                         GACAAATTCCACTCCTTCCACCCGGTGGCCACCATCCTGAGCTACCTCACC
genomic: TGCTCTTGGCTGAGCTCAGCACCAGGATCCAGCTGAAAGCTGAGGGAGAGgtaagagccc ... tcttatgcagGACAAATTCCACTCCTTCCACCCGGTGGCCACCATCCTGAGCTACCTCACC
EST: gi|21759904|gb|BQ635445.1|BQ635445
EST:     CCAGCTGAAAGCTGAGGGAGAG                         GCCAAATTCCACTCCTTCCACCCGGTGGCCCCCATCCTGAGCTACCTCACC
genomic: CCAGCTGAAAGCTGAGGGAGAGgtaagagccc ... tcttatgcagGACAAATTCCACTCCTTCCACCCGGTGGCCACCATCCTGAGCTACCTCACC
EST: gi|19822437|gb|BQ048461.1|BQ048461
EST:     TGCTC-TGGCTGAGCTCAGCACCAGGATCCAGCTGAAAGCTGAGGGAGAG                         GACAAATTCCACTCCTTCCACCCGG-GGCCACCATCCTGAGCTACCTCACC
genomic: TGCTCTTGGCTGAGCTCAGCACCAGGATCCAGCTGAAAGCTGAGGGAGAGgtaagagccc ... tcttatgcagGACAAATTCCACTCCTTCCACCCGGTGGCCACCATCCTGAGCTACCTCACC
EST: gi|78024917|gb|DV493304.1|DV493304
EST:     TGCTCTTGGCTGAGCTCAGCACCAGGATCCAGCTGAAAGCTGAGGGAGAG                         GACAAATTCCACTCCTTCCACCCGGTGGCCACCATCCTGAGCTACCTCACC
genomic: TGCTCTTGGCTGAGCTCAGCACCAGGATCCAGCTGAAAGCTGAGGGAGAGgtaagagccc ... tcttatgcagGACAAATTCCACTCCTTCCACCCGGTGGCCACCATCCTGAGCTACCTCACC
EST: gi|78022473|gb|DV490860.1|DV490860
EST:     TGCTCTTGGCTGAGCTCAGCACCAGGATCCAGCTGAAAGCTGAGGGAGAG                         GACAAATTCCACTCCTTCCACCCGGTGGCCACCATCCTGAGCTACCTCACC
genomic: TGCTCTTGGCTGAGCTCAGCACCAGGATCCAGCTGAAAGCTGAGGGAGAGgtaagagccc ... tcttatgcagGACAAATTCCACTCCTTCCACCCGGTGGCCACCATCCTGAGCTACCTCACC
EST: gi|24767004|gb|CA402149.1|CA402149
EST:     TGCTCTTGGCTGAGCTCAGCACCAGGATCCAGCTGAAAGCTGAGGGAGAG                         GACAAATTCCACTCCTTCCACCCGGTGGCCACCATCCTGAGCTACCTCACC
genomic: TGCTCTTGGCTGAGCTCAGCACCAGGATCCAGCTGAAAGCTGAGGGAGAGgtaagagccc ... tcttatgcagGACAAATTCCACTCCTTCCACCCGGTGGCCACCATCCTGAGCTACCTCACC
EST: gi|4730538|gb|AI649704.1|AI649704
EST:     TGCTCTTGGCTGAGCTCAGCACCAGGATCCAGCTGAAAGCTGAGGGAGAG                         GACAAATTCCACTCCTTCCACCCGGTGGCCACCATCCTGAGCTACCTCACC
genomic: TGCTCTTGGCTGAGCTCAGCACCAGGATCCAGCTGAAAGCTGAGGGAGAGgtaagagccc ... tcttatgcagGACAAATTCCACTCCTTCCACCCGGTGGCCACCATCCTGAGCTACCTCACC
EST: gi|20508170|gb|BQ279921.1|BQ279921
EST:     TGCTCTTGGCTGAGCTCAGCACCAGGATCCAGCTGAAAGCTGAGGGAGAG                         GACAAATTCCACTCCTTCCACCCGGTGGCCACCATCCTGAGCTACCTCACC
genomic: TGCTCTTGGCTGAGCTCAGCACCAGGATCCAGCTGAAAGCTGAGGGAGAGgtaagagccc ... tcttatgcagGACAAATTCCACTCCTTCCACCCGGTGGCCACCATCCTGAGCTACCTCACC
EST: gi|78023741|gb|DV492128.1|DV492128
EST:     TGCTCTTGGCTGAGCTCAGCACCAGGATCCAGCTGAAAGCTGAGGGAGAG                         GACAAATTCCACTCCTTCCACCCGGTGGCCACCATCCTGAGCTACCTCACC
genomic: TGCTCTTGGCTGAGCTCAGCACCAGGATCCAGCTGAAAGCTGAGGGAGAGgtaagagccc ... tcttatgcagGACAAATTCCACTCCTTCCACCCGGTGGCCACCATCCTGAGCTACCTCACC
EST: gi|5468566|gb|AI834357.1|AI834357
EST:     TGCTCTTGGCTGAGCTCAGCACCAGGATCCAGCTGAAAGCTGAGGGAGAG                         GACAAATTCCACTCCTTCCACCCGGTGGCCACCATCCTGAGCTACCTCACC
genomic: TGCTCTTGGCTGAGCTCAGCACCAGGATCCAGCTGAAAGCTGAGGGAGAGgtaagagccc ... tcttatgcagGACAAATTCCACTCCTTCCACCCGGTGGCCACCATCCTGAGCTACCTCACC
EST: gi|6022206|gb|AW067134.1|AW067134
EST:     TGCTCTTGGCTGAGCTCAGCACCAGGATCCAGCTGAAAGCTGAGGGAGAG                         GACAAATTCCACTCCTTCCACCCGGTGGCCACCATCCTGAGCTACCTCACC
genomic: TGCTCTTGGCTGAGCTCAGCACCAGGATCCAGCTGAAAGCTGAGGGAGAGgtaagagccc ... tcttatgcagGACAAATTCCACTCCTTCCACCCGGTGGCCACCATCCTGAGCTACCTCACC
EST: gi|31352116|gb|CD436473.1|CD436473
EST:     TGCTCTTGGCTGAGCTCAGCACCAGGATCCAGCTGAAAGCTGAGGGAGAG                         GACAAATTCCACTCCTTCCACCCGGTGGCCACCATCCTGAGCTACCTCACC
genomic: TGCTCTTGGCTGAGCTCAGCACCAGGATCCAGCTGAAAGCTGAGGGAGAGgtaagagccc ... tcttatgcagGACAAATTCCACTCCTTCCACCCGGTGGCCACCATCCTGAGCTACCTCACC
EST: gi|19769579|gb|BQ034300.1|BQ034300
EST:     TGCTCTTGGCTGAGCTCAGCCCCAGGATCCAGCTGAAAGCTGAGGGAGAG                         GCCAAATTCCACTCCTTCCACCCGGTGGCCACCATCCTGAGCTACCTCACC
genomic: TGCTCTTGGCTGAGCTCAGCACCAGGATCCAGCTGAAAGCTGAGGGAGAGgtaagagccc ... tcttatgcagGACAAATTCCACTCCTTCCACCCGGTGGCCACCATCCTGAGCTACCTCACC
EST: gi|89106005|gb|DY576222.1|DY576222
EST:     GCTTCT-GGCTGAGCTCAGCACCAGGATCCAGCTGAAAGCTGAGGGAGAG                         GACAAATTCCACTCCTTCCACCCGGTGGCCACCATCCTGAGCTACCTCACC
genomic: GCT-CTTGGCTGAGCTCAGCACCAGGATCCAGCTGAAAGCTGAGGGAGAGgtaagagccc ... tcttatgcagGACAAATTCCACTCCTTCCACCCGGTGGCCACCATCCTGAGCTACCTCACC
EST: gi|211029040|gb|FL245286.1|FL245286
EST:     TGCTCTTGGCTGAGCTCAGCACCAGGATCCAGCTGAAAGCTGAGGGAGAG                         GACAAATTCCACTCCTTCCACCCGGTGGCCACCATCCTGAGCTACCTCACC
genomic: TGCTCTTGGCTGAGCTCAGCACCAGGATCCAGCTGAAAGCTGAGGGAGAGgtaagagccc ... tcttatgcagGACAAATTCCACTCCTTCCACCCGGTGGCCACCATCCTGAGCTACCTCACC
EST: gi|5468846|gb|AI834637.1|AI834637
EST:     TGCTCTTGGCTGAGCTCAGCACCAGGATCCAGCTGAAAGCTGAGGGAGAG                         GACAAATTCCACTCCTTCCACCCGGTGGCCACCATCCTGAGCTACCTCACC
genomic: TGCTCTTGGCTGAGCTCAGCACCAGGATCCAGCTGAAAGCTGAGGGAGAGgtaagagccc ... tcttatgcagGACAAATTCCACTCCTTCCACCCGGTGGCCACCATCCTGAGCTACCTCACC
EST: gi|5456315|gb|AI834005.1|AI834005
EST:     TGCTCTTGGCTGAGCTCAGCCCCAGGATCCAGCTGAAAGCTGAGGGAGAG                         GACAAATTCCACTCCTTCCACCCGGTGGCCCCCATCCTGAGCTACCTCACC
genomic: TGCTCTTGGCTGAGCTCAGCACCAGGATCCAGCTGAAAGCTGAGGGAGAGgtaagagccc ... tcttatgcagGACAAATTCCACTCCTTCCACCCGGTGGCCACCATCCTGAGCTACCTCACC
EST: gi|78545065|gb|DV622563.1|DV622563
EST:     TGCTCTTGGCTGAGCTCAGCACCAGGATCCAGCTGAAAGCTGAGGGAGAG                         GACAAATTCCACTCCTTCCACCCGGTGGCCACCATCCTGAGCTACCTCACC
genomic: TGCTCTTGGCTGAGCTCAGCACCAGGATCCAGCTGAAAGCTGAGGGAGAGgtaagagccc ... tcttatgcagGACAAATTCCACTCCTTCCACCCGGTGGCCACCATCCTGAGCTACCTCACC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 308

CAACACCTGTGAGGACTCGCTCCTCGCCGCACCTATCATCCTTGATCTGGTGCTCTTGGCTGAGCTCAGCACCAGGATCCAGCTGAAAGCTGAGGGAGAGgtaagagccc ... tcttatgcagGACAAATTCCACTCCTTCCACCCGGTGGCCACCATCCTGAGCTACCTCACCAAGGCACCCCTG


Block sizes: 43 (upstream exon), 34 (downstream exon)
Score: 14

CAACACCTGTGAGGACTCGCTCCTCGCCGCACCTATCATCCTTGATCTGGTGCTCTTGGCTGAGCTCAGCACCAGGATCCAGCTGAAAGCTGAGGGAGAGgtaagagccc ... tcttatgcagGACAAATTCCACTCCTTCCACCCGGTGGCCACCATCCTGAGCTACCTCACCAAGGCACCCCTG


Block sizes: 40 (upstream exon), 46 (downstream exon)
Score: 13

CAACACCTGTGAGGACTCGCTCCTCGCCGCACCTATCATCCTTGATCTGGTGCTCTTGGCTGAGCTCAGCACCAGGATCCAGCTGAAAGCTGAGGGAGAGgtaagagccc ... tcttatgcagGACAAATTCCACTCCTTCCACCCGGTGGCCACCATCCTGAGCTACCTCACCAAGGCACCCCTG


Block sizes: 47 (upstream exon), 49 (downstream exon)
Score: 73

CAACACCTGTGAGGACTCGCTCCTCGCCGCACCTATCATCCTTGATCTGGTGCTCTTGGCTGAGCTCAGCACCAGGATCCAGCTGAAAGCTGAGGGAGAGgtaagagccc ... tcttatgcagGACAAATTCCACTCCTTCCACCCGGTGGCCACCATCCTGAGCTACCTCACCAAGGCACCCCTG


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CAACACCTGTGAGGACTCGCTCCTCGCCGCACCTATCATCCTTGATCTGGTGCTCTTGGCTGAGCTCAGCACCAGGATCCAGCTGAAAGCTGAGGGAGAGgtaagagccccccaagtgattaacctgaaagcacgctgcacgctaggtgatatagcacttttaataccttctggtgtctctcttatgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGCTGA