1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
TCCACATGCTCTGGAGGCTCTTCGGCGCAATGTTAGTGACAACAGAGTGGAGGATCGATGTATTATACTTGAAGGAGATAACCGGGTGACTGCACCCAAAgtatgtactgggcaaattccatcttttggtctaacacatgaattacaatggcggctgatctttctttcttactggacttgaattag
species | Zea mays |
transcript | GRMZM2G154574_T01 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: AGGATCGATGTATTATACTTGAAGGAGATAACCGGGTGACTGCACCCAAA GGTGTTGCTGATCGAGTCTGTCTTGGATTGTTACCCTCAAGTGAATGTAGCEST: gi|113679358|gb|DW836903.1|DW836903
genomic: AGGATCGATGTATTATACTTGAAGGAGATAACCGGGTGACTGCACCCAAAgtatgtactg ... cttgaattagAGTGTTGCTGATCGAGTCTGTCTTGGATTGTTACCCTCAAGTGAATGTAGC
EST: ATCGATGTATTATACTTGAAGGAGATAACCGGGTGACTGCACCCAAA AGTGTTGCTGATCGAGTCTGTCTTGGAATTGTTACCCTCAAGTGAAEST: gi|26559427|gb|CA831662.1|CA831662
genomic: ATCGATGTATTATACTTGAAGGAGATAACCGGGTGACTGCACCCAAAgtatgtactg ... cttgaattagAGTGTTGCTGATCGAGTCTGTCTTGGA-TTGTTACCCTCAAGTGAA
EST: AGGATCGATGTATTATACTTGAAGGAGATAACCGGGTGACTGCACCCAAA GGTGTTGCTGATCGAGTCTGTCTTGGATTGTTACCCTCAAGTGAATGTAGCEST: gi|26559057|gb|CA831292.1|CA831292
genomic: AGGATCGATGTATTATACTTGAAGGAGATAACCGGGTGACTGCACCCAAAgtatgtactg ... cttgaattagAGTGTTGCTGATCGAGTCTGTCTTGGATTGTTACCCTCAAGTGAATGTAGC
EST: AGGATCGATGTATTATACTTGAAGGAGATAACCGGGTGACTGCACCCAAA GGTGTTGCTGATCGAGTCTGTCTTGGATTGTTACCCTCAAGTGAATGTAGCEST: gi|22542262|gb|BU092700.1|BU092700
genomic: AGGATCGATGTATTATACTTGAAGGAGATAACCGGGTGACTGCACCCAAAgtatgtactg ... cttgaattagAGTGTTGCTGATCGAGTCTGTCTTGGATTGTTACCCTCAAGTGAATGTAGC
EST: AGGATCGATGTATTATACTTGAAGGAGATAACCGGGTGACTGCACCCAAA GGTGTTGCTGATCGAGTCTGTCTTGGATTGTTACCCTCAAGTGAATGTAGCEST: gi|32942516|gb|CF047335.1|CF047335
genomic: AGGATCGATGTATTATACTTGAAGGAGATAACCGGGTGACTGCACCCAAAgtatgtactg ... cttgaattagAGTGTTGCTGATCGAGTCTGTCTTGGATTGTTACCCTCAAGTGAATGTAGC
EST: AGGATCGATGTATTATACTTGAAGGAGATAACCGGGTGACTGCACCCAAA GGTGTTGCTGATCGAGTCTGTCTTGGATTGTTACCCTCAAGTGAATGTAGCEST: gi|87155759|gb|DY400548.1|DY400548
genomic: AGGATCGATGTATTATACTTGAAGGAGATAACCGGGTGACTGCACCCAAAgtatgtactg ... cttgaattagAGTGTTGCTGATCGAGTCTGTCTTGGATTGTTACCCTCAAGTGAATGTAGC
EST: AGGATCGATGTATTATACTTGAAGGAGATAACCGGGTGACTGCACCCAAA GGTGTTGCTGATCGAGTCTGTCTTGGATTGTTACCCTCAAGTGAATGTAGCEST: gi|22935761|gb|BU572036.1|BU572036
genomic: AGGATCGATGTATTATACTTGAAGGAGATAACCGGGTGACTGCACCCAAAgtatgtactg ... cttgaattagAGTGTTGCTGATCGAGTCTGTCTTGGATTGTTACCCTCAAGTGAATGTAGC
EST: AGGATCGATGTATTATACTTGAAGGAGATAACCGGGTGACTGCACCCAAA GGTGTTGCTGATCGAGTCTGTCTTGGATTGTTACCCTCAAGTGAATGTAGC
genomic: AGGATCGATGTATTATACTTGAAGGAGATAACCGGGTGACTGCACCCAAAgtatgtactg ... cttgaattagAGTGTTGCTGATCGAGTCTGTCTTGGATTGTTACCCTCAAGTGAATGTAGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCCACATGCTCTGGAGGCTCTTCGGCGCAATGTTAGTGACAACAGAGTGGAGGATCGATGTATTATACTTGAAGGAGATAACCGGGTGACTGCACCCAAAgtatgtactgggcaaattccatcttttggtctaacacatgaattacaatggcggctgatctttctttcttactggacttgaattag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT