1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
TTGTGAGCTCCTTGGGGTTGACCCAGCTGATGTAGATATAATGATGGGTACTTTTACCAAGTCTTTTGGATCATGTGGTGGATATATTGCCGCATCAAAGgtgcatactactgaaagtgactgtattacactgtagcacttgtaagattgcattgaagatttgctgattcttttcactataaatttcag
species | Zea mays |
transcript | GRMZM2G152888_T01 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: TTTTACCCAAGTCTTTTGGATCATGTGGTGGATATATTGCCGCATCAAAG GAGATAATTCAGCACCTTAAGCATAGTTGTCCGGCCCATCTGTATGCTACTEST: gi|78078704|gb|DV507116.1|DV507116
genomic: TTTTA-CCAAGTCTTTTGGATCATGTGGTGGATATATTGCCGCATCAAAGgtgcatacta ... taaatttcagGAGATAATTCAGCACCTTAAGCATAGTTGTCCGGCCCATCTGTATGCTACT
EST: TTTGGATCATGTGGTGGATATATTGCCGCATCAAAG GAGATAATTCAGCACCTTAAGCATAGTTGTCCGGCCCATCTGTATGCTACTEST: gi|32835583|gb|CD975261.1|CD975261
genomic: TTTGGATCATGTGGTGGATATATTGCCGCATCAAAGgtgcatacta ... taaatttcagGAGATAATTCAGCACCTTAAGCATAGTTGTCCGGCCCATCTGTATGCTACT
EST: CTTTTACCAAGTCTTTTGGATCATGTGGTGGATATATTGCCGCATCAAAG GAGATAATTCAGCACCTTAAGCATAGTTGTCCGGCCCATCTGTATGCTACTEST: gi|76011503|gb|DT938673.1|DT938673
genomic: CTTTTACCAAGTCTTTTGGATCATGTGGTGGATATATTGCCGCATCAAAGgtgcatacta ... taaatttcagGAGATAATTCAGCACCTTAAGCATAGTTGTCCGGCCCATCTGTATGCTACT
EST: CTTTTACCAAGTCTTTTGGATCATGTGGTGGATATATTGCCGCATCAAAG GAGATAATTCAGCACCTTAAGCATAGTTGTCCGGCCCATCTGTATGCTACT
genomic: CTTTTACCAAGTCTTTTGGATCATGTGGTGGATATATTGCCGCATCAAAGgtgcatacta ... taaatttcagGAGATAATTCAGCACCTTAAGCATAGTTGTCCGGCCCATCTGTATGCTACT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTGTGAGCTCCTTGGGGTTGACCCAGCTGATGTAGATATAATGATGGGTACTTTTACCAAGTCTTTTGGATCATGTGGTGGATATATTGCCGCATCAAAGgtgcatactactgaaagtgactgtattacactgtagcacttgtaagattgcattgaagatttgctgattcttttcactataaatttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA