1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' |
CACTTGTAAGCTTCGGTAAGGTTGATCCTGGGCACAAGGAAAAAGTTGAACAGAATGGCTTGTCCATCTACTCATGGGAAGAGTTTCTGCAACTGgtaaggttctcctttcctgaccaaatcacacatggaatgaataagtgcttagttacaagaatattaataatgtgttaaggcatgtttttcatttcaaatttatacatttttgggggcatccttgcgagaaatatgccttgatatatcagttagaaaattattttttttctgttctaccaacag
species | Zea mays |
transcript | GRMZM2G152127_T01 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: TTGAACAGAATGGCTTGTCCATCTACTCATGGGAAGAGTTTCTGCAACTG GGAGGTAAAGAGAAGTTTGAACTTCCCCCCAGGGAAA-GGATGACATATGTEST: gi|76014959|gb|DT942129.1|DT942129
genomic: TTGAACAGAATGGCTTGTCCATCTACTCATGGGAAGAGTTTCTGCAACTGgtaaggttct ... ctaccaacagGGAGGTAAAGAGAAGTTTGAACTTCCACCCAAGGAAAAGGATGACATATGT
EST: TTGAACAGAATGGCTTGTCCATCTACTCATGGGAAGAGTTTCTGCAACTG GGAGGTAAAGAGAAGTTTGAACTTCCACCCA-GGAAAAAGATGACATATGTEST: gi|32867927|gb|CF007609.1|CF007609
genomic: TTGAACAGAATGGCTTGTCCATCTACTCATGGGAAGAGTTTCTGCAACTGgtaaggttct ... ctaccaacagGGAGGTAAAGAGAAGTTTGAACTTCCACCCAAGGAAAAGGATGACATATGT
EST: TTGAACAGAATGGCTTGTCCATCTACTCATGGGAAGAGTTTCTGCAACTG GGAGGTAAAGAGAAGTTTGAACTTCCACCCAAGGAAAAGGATGACATATGTEST: gi|74239653|gb|DT647567.1|DT647567
genomic: TTGAACAGAATGGCTTGTCCATCTACTCATGGGAAGAGTTTCTGCAACTGgtaaggttct ... ctaccaacagGGAGGTAAAGAGAAGTTTGAACTTCCACCCAAGGAAAAGGATGACATATGT
EST: TTGAACAGAATGGCTTGTCCATCTACTCATGGGAAGAGTTTCTGCCACTG GGAGGTAAGGAGAAGEST: gi|71426983|gb|DR808033.1|DR808033
genomic: TTGAACAGAATGGCTTGTCCATCTACTCATGGGAAGAGTTTCTGCAACTGgtaaggttct ... ctaccaacagGGAGGTAAAGAGAAG
EST: TTGAACAGAATGGCTTGTCCATCTACTCATGGGAAGAGTTTCTGCAACTG GGAGGTAAAGAGAAGTTTGAACTTCCACCCAAGGAAAAGGATGACATATGTEST: gi|148958182|gb|EC904386.2|EC904386
genomic: TTGAACAGAATGGCTTGTCCATCTACTCATGGGAAGAGTTTCTGCAACTGgtaaggttct ... ctaccaacagGGAGGTAAAGAGAAGTTTGAACTTCCACCCAAGGAAAAGGATGACATATGT
EST: TTGAACAGAATGGCTTGTCCATCTACTCATGGGAAGAGTTTCTGCAACTG GGAGGTAAAGAGAAGTTTGAACTTCCACCCCAGGAAAAGGATGACATATGTEST: gi|76011816|gb|DT938986.1|DT938986
genomic: TTGAACAGAATGGCTTGTCCATCTACTCATGGGAAGAGTTTCTGCAACTGgtaaggttct ... ctaccaacagGGAGGTAAAGAGAAGTTTGAACTTCCACCCAAGGAAAAGGATGACATATGT
EST: TTGAACAGAATGGCTTGTCCATCTACTCATGGGAAGAGTTTCTGCAACTG GGAGGTAAAGAGAAGTTTGAACTTCCACCCAAGGAAAAGGATGACATATGTEST: gi|148961536|gb|EE012289.2|EE012289
genomic: TTGAACAGAATGGCTTGTCCATCTACTCATGGGAAGAGTTTCTGCAACTGgtaaggttct ... ctaccaacagGGAGGTAAAGAGAAGTTTGAACTTCCACCCAAGGAAAAGGATGACATATGT
EST: TGAACAGAATGGCTTGTCCATCTACTCATGGGAAGAGTTTTCTGCA-CTG GGAGGTAAAGAGAAAGTT-GAACTTCCACCCAAGGGAAAAGGATGAEST: gi|24766862|gb|CA402007.1|CA402007
genomic: TGAACAGAATGGCTTGTCCATCTACTCATGGGAAGAGTTT-CTGCAACTGgtaaggttct ... ctaccaacagGGAGGTAAAGAGAA-GTTTGAACTTCCACCCAAGG-AAAAGGATGA
EST: TTGAACAGAATGGCTTGTCCATCTACTCATGGGAAGAGTTTCTGCAACTG GGAGGTAAAGAGAAGTTTGAACTTCCACCCAAGGAAAAGGATGACATATGT
genomic: TTGAACAGAATGGCTTGTCCATCTACTCATGGGAAGAGTTTCTGCAACTGgtaaggttct ... ctaccaacagGGAGGTAAAGAGAAGTTTGAACTTCCACCCAAGGAAAAGGATGACATATGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CACTTGTAAGCTTCGGTAAGGTTGATCCTGGGCACAAGGAAAAAGTTGAACAGAATGGCTTGTCCATCTACTCATGGGAAGAGTTTCTGCAACTGgtaaggttctcctttcctgaccaaatcacacatggaatgaataagtgcttagttacaagaatattaataatgtgttaaggcatgtttttcatttcaaatttatacatttttgggggcatccttgcgagaaatatgccttgatatatcagttagaaaattattttttttctgttctaccaacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA