1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
ATGCCCAAGCATTCAAGAGTTGACCCCTGGGGTGGTCCTTTTCTCTGTTCCTCCTGTCAATTGAAAAAGGAGGCCATGGAAGGGAAGCTACATTCAAGAAgtatggatgtctttacccagaagctataacccgtttttattttgcactggaccataactataaccctcttttttcagattcccaatttgatgttcgacct...
species | Zea mays |
transcript | GRMZM2G150213_T04 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: CTCCTGTCAATTGAAAAAGGAGGCCATGGAAGGGAAGCTACATTCAAGAACAEST: gi|16926536|gb|BM079604.1|BM079604
genomic: CTCCTGTCAATTGAAAAAGGAGGCCATGGAAGGGAAGCTACATTCAAG-A-Agtatggatgt ... gaaacagca
EST: CTCCTGTCAATTGAAAAAGGAGGCCATGGAAGGGAAGCTACATTCAAGAACAEST: gi|91053764|gb|EB164182.1|EB164182
genomic: CTCCTGTCAATTGAAAAAGGAGGCCATGGAAGGGAAGCTACATTCAAG-A-Agtatggatgt ... gaaacagca
EST: CTCCTGTCAATTGAAAAAGGAGGCCATGGAAGGGAAGCTACATTCAAGAA CAGAGTGACACTGCGCGCCCTCTTGCATATCGAATTTAAGCTATGGCAGCCEST: gi|211462355|gb|FK984345.1|FK984345
genomic: CTCCTGTCAATTGAAAAAGGAGGCCATGGAAGGGAAGCTACATTCAAGAAgtatggatgt ... gaaacagcagCAGAGTGACACTGCGCGCCCTCTTGCATATCGAATTTAAGCTATGGCAGCC
EST: CTCCTGTCAATTGAAAAAGGAGGCCATGGAAGGGAAGCTACATTCAAGAACAEST: gi|211462355|gb|FK984345.1|FK984345
genomic: CTCCTGTCAATTGAAAAAGGAGGCCATGGAAGGGAAGCTACATTCAAG-A-Agtatggatgt ... gaaacagca
EST: CTCCTGTCAATTGAAAAAGGAGGCCATGGAAGGGAAGCTACATTCAAGAACA
genomic: CTCCTGTCAATTGAAAAAGGAGGCCATGGAAGGGAAGCTACATTCAAG-A-Agtatggatgt ... gaaacagca
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATGCCCAAGCATTCAAGAGTTGACCCCTGGGGTGGTCCTTTTCTCTGTTCCTCCTGTCAATTGAAAAAGGAGGCCATGGAAGGGAAGCTACATTCAAGAAgtatggatgtctttacccagaagctataacccgtttttattttgcactggaccataactataaccctcttttttcagattcccaatttgatgttcgacct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG