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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AACTGGCCCTGGTGGGAATTCTAGTGGCAATGCCACAGTCGGAGAAAGACTTTTGTCGACTTTATTGACCGAAATGGATGGTTTAGAACTGGCTACGgtactgttagcctgctgataactttctgtgtgattctactgattatatctacatgtatattcactagaaggcaatcctttttttag

Basic information

species Zea mays
transcript GRMZM2G149994_T01
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G149994_T02 (Zea mays), 5'ss of exon 10
lower sequence: LOC_Os05g31220.1 (Oryza sativa), 5'ss of exon 6
AACTGGCCCTGGTGGGAATTCTAGTGGCAATGCCACAGTCGGAGAAAGACTTTTGTCGACTTTATTGACCGAAATGGATGGTTTAGAACTGGCTACGgtactg---------ttagcctgctgataactttctg-tgtgattctactgattatatct---acatgtatattc-----actagaaggcaatcct---ttttttag-----
|||||| ||  | ||||| ||||||||||||||||| || ||||||||||| || || ||| ||||||| |||||||||||||||||||||||||||||||           ||||  ||  |||  | |||   ||||| ||| ||  | ||||||   | |||    |||     |||| ||    ||| |    |||||       
AACTGGTCCCAGCGGGAACTCTAGTGGCAATGCCACGGTTGGAGAAAGACTCTTATCAACTCTATTGACGGAAATGGATGGTTTAGAACTGGCTACGgtacctcttacatatttagattgacgatggcattcaaatgtgactctccttgtcatatctcatatatgccctttctttgtactaaaaaagtatcttgcaatttttgatgtag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|24934695|gb|CA452913.1|CA452913
EST:     GACTTTTGTCGACTTTATTGACCGAAATGGATGGTTTGGAACTGGCTACG                         GGAATTATCGTATTGGGTGCTACGAATCGCCCAAATGCAATTGATGCTGCT
genomic: GACTTTTGTCGACTTTATTGACCGAAATGGATGGTTTAGAACTGGCTACGgtactgttag ... ctttttttagGGAATTATCGTATTGGGTGCTACGAATCGCCCAAATGCAATTGATGCTGCT
EST: gi|76015203|gb|DT942373.1|DT942373
EST:     GACTTTTGTCGACTTTATTGACCGAAATGGATGGTTTAGAACTGGCTACG                         GGAATTATCGTATTGGGTGCTACGAATCGCCCAAATGCAATTGATGCTGCT
genomic: GACTTTTGTCGACTTTATTGACCGAAATGGATGGTTTAGAACTGGCTACGgtactgttag ... ctttttttagGGAATTATCGTATTGGGTGCTACGAATCGCCCAAATGCAATTGATGCTGCT
EST: gi|37391984|gb|CF633237.1|CF633237
EST:     GACTTTTGTCGACTTTATTGACCGAAATGGATGGTTTAGAACTGGCTACG                         GGAATTATCGTATTGGGTGCTACGAATCGCCCAAATGCAATTGATGCTGCT
genomic: GACTTTTGTCGACTTTATTGACCGAAATGGATGGTTTAGAACTGGCTACGgtactgttag ... ctttttttagGGAATTATCGTATTGGGTGCTACGAATCGCCCAAATGCAATTGATGCTGCT
EST: gi|211033356|gb|FL442938.1|FL442938
EST:     GACTTTTGTCGACTTTATTGACCGAAATGGATGGTTTAGAACTGGCTACG                         GGAATTATCGTATTGGGTGCTACGAATCGCCCAAAAGCAATTGATGCTGCT
genomic: GACTTTTGTCGACTTTATTGACCGAAATGGATGGTTTAGAACTGGCTACGgtactgttag ... ctttttttagGGAATTATCGTATTGGGTGCTACGAATCGCCCAAATGCAATTGATGCTGCT
EST: gi|67026000|gb|CO454749.1|CO454749
EST:     GACTTTTGTCGACTTTATTGACCGAAATGGATGGTTTAGAACTGGCTACG                         GGAATTATCGTATTGGGTGCTACGAATCGCCCAAATGCAATTGATGCTGCT
genomic: GACTTTTGTCGACTTTATTGACCGAAATGGATGGTTTAGAACTGGCTACGgtactgttag ... ctttttttagGGAATTATCGTATTGGGTGCTACGAATCGCCCAAATGCAATTGATGCTGCT
EST: gi|24934696|gb|CA452914.1|CA452914
EST:     GACTTTTGTCGACTTTATTGACCGAAATGGATGGTTTGGAACTGGCTACG                         GGAATTATCGTATTGGGTGCTACGAATCGCCCAAATGCAATTGATGCTGCT
genomic: GACTTTTGTCGACTTTATTGACCGAAATGGATGGTTTAGAACTGGCTACGgtactgttag ... ctttttttagGGAATTATCGTATTGGGTGCTACGAATCGCCCAAATGCAATTGATGCTGCT
EST: gi|67018676|gb|CO447425.1|CO447425
EST:     GACTTTTGTCGACTTTATTGACCGAAATGGATGGTTTAGAACTGGCTACG                         GGAATTATCGTATTGGGTGCTACGAATCGCCCAAATGCAATTGATGCTGCT
genomic: GACTTTTGTCGACTTTATTGACCGAAATGGATGGTTTAGAACTGGCTACGgtactgttag ... ctttttttagGGAATTATCGTATTGGGTGCTACGAATCGCCCAAATGCAATTGATGCTGCT
EST: gi|24961608|gb|CA483609.1|CA483609
EST:     GACTTTTGTCGACTTTATTGACCGAAATGGATGGTTTGGAACTGGCTACG                         GGAATTATCGTATTGGGTGCTACGAATCGCCCAAATGCAATTGATGCTGCT
genomic: GACTTTTGTCGACTTTATTGACCGAAATGGATGGTTTAGAACTGGCTACGgtactgttag ... ctttttttagGGAATTATCGTATTGGGTGCTACGAATCGCCCAAATGCAATTGATGCTGCT
EST: gi|33092600|gb|CF052594.1|CF052594
EST:     GACTTTTGTCGACTTTATTGACCGAAATGGATGGTTTAGAACTGGCTACG                         GGAATTATCGTATTGGGTGCTACGAATCGCCCAAATGCAATTGATGCTGCT
genomic: GACTTTTGTCGACTTTATTGACCGAAATGGATGGTTTAGAACTGGCTACGgtactgttag ... ctttttttagGGAATTATCGTATTGGGTGCTACGAATCGCCCAAATGCAATTGATGCTGCT
EST: gi|24773369|gb|CA408623.1|CA408623
EST:     GACTTTTGTCGACTTTATTGACCGAAATGGATGGTTTGGAACTGGCTACG                         GGAATTATCGTATTGGGTGCTACGAATCGCCCAAATGCAATTGATGCTGCT
genomic: GACTTTTGTCGACTTTATTGACCGAAATGGATGGTTTAGAACTGGCTACGgtactgttag ... ctttttttagGGAATTATCGTATTGGGTGCTACGAATCGCCCAAATGCAATTGATGCTGCT
EST: gi|24773164|gb|CA408418.1|CA408418
EST:     GACTTTTGTCGACTTTATTGACCGAAATGGATGGTTTGGAACTGGCTACG                         GGAATTATCGTATTGGGTGCTACGAATCGCCCAAATGCAATTGATGCTGCT
genomic: GACTTTTGTCGACTTTATTGACCGAAATGGATGGTTTAGAACTGGCTACGgtactgttag ... ctttttttagGGAATTATCGTATTGGGTGCTACGAATCGCCCAAATGCAATTGATGCTGCT
EST: gi|4609489|gb|AI600328.1|AI600328
EST:     GACTTTTGTCGACTTTATTGACCGAAATGGATGGTTTAGAACTGGCTACG                         GGAATTATCGTATTGGGTGCTACGAATCGCCCAAATGCAATTGATGCTGCT
genomic: GACTTTTGTCGACTTTATTGACCGAAATGGATGGTTTAGAACTGGCTACGgtactgttag ... ctttttttagGGAATTATCGTATTGGGTGCTACGAATCGCCCAAATGCAATTGATGCTGCT