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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGGTAGAGGCATGGATGCAAAGCATGGTGCAAAGAGCATGGACAATGGAAAGCTTAAGTTCTGCTTGCAGTCTTTTGCATCATTTAGTGTGGCCAATAGgtaaatgcccagcttccttaaacacatcgagtgtatgtcatatggctcttatgaatcaaactctggaaataacttgtgtcgcaactaactgtcttgattcttgcaatatcttttgcatgatttatatgttttttccggaataaatattgtttgtgctctacag

Basic information

species Zea mays
transcript GRMZM2G149122_T02
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G149122_T01 (Zea mays), 5'ss of exon 8
lower sequence: LOC_Os08g38440.1 (Oryza sativa), 5'ss of exon 6
AAGGTAGAGGCATGGATGCAAAGCATGGTGCAAAGAGCATGGACAATGGAAAGCTTAAGTTCTGCTTGCAGTCTTTTGCATCATTTAGTGTGGCCAATAGgtaaatgcccagcttccttaaacac-atcgagtg-----tatgtcatatggctcttatgaatcaaact---ctggaaataacttgtgtcgcaactaactgtcttgattcttgcaatatctt-ttgcatgatttatatgtttttt---------------ccggaataaata-ttgtttg-tgctctacag
|||||||||||||||||||||||||||||||||||||| | |||||||||| ||| ||||| ||  ||||||||||||||||||||||||||||||||||||||||  | |  ||| | ||| || || ||||      | | || | | |||    | || |||||     |   ||  | ||     |||   | |  | | |   |||| ||| || | |||||||    || |  || ||                | ||| ||||| || |||| | || |||||
AAGGTAGAGGCATGGATGCAAAGCATGGTGCAAAGAGCGTCGACAATGGAAGGCTGAAGTTTTGTCTGCAGTCTTTTGCATCATTTAGTGTGGCCAATAGgtaaatatctattttcttaaaataccatggagtactaaatctttcctttagctacattaaaacaaaccgccttaataaagagtttctctgcattgatccatatagtaccttgaaatctcctgttgcatggcacatgttgttcttgacagtttaagcttgtcagaacaaataattatttggttctttacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211375500|gb|FK991339.1|FK991339
EST:     AAGCTTAAGTTCTGCTTGCAGTCTTTTGCATCATTTAGTGTGGCCAATAG                         GACAATAATGGCATTATGGAAGGCAAGATCTCTGAGCACAGAGCTTAAAGT
genomic: AAGCTTAAGTTCTGCTTGCAGTCTTTTGCATCATTTAGTGTGGCCAATAGgtaaatgccc ... tgctctacagGACAATAATGGCATTATGGAAGGCAATATCTCTGAGCATAGAGCTTAAAGT
EST: gi|71448772|gb|DR829822.1|DR829822
EST:     AAGCTTAAGTTCTGCTTGCAGTCTTTTGCATCATTTAGTGTGGCCAATAG                         GACAATAATGGCATTATGGAAGGCAAGATCTCTGAGCACAGAGCTTAAAGT
genomic: AAGCTTAAGTTCTGCTTGCAGTCTTTTGCATCATTTAGTGTGGCCAATAGgtaaatgccc ... tgctctacagGACAATAATGGCATTATGGAAGGCAATATCTCTGAGCATAGAGCTTAAAGT