1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GGCGCTTGGTGGGAAGACATTTAAAATGAAATTTGGTCATCATGGTGGGAATCACCCTGTCTGTGATCTCCGTAGTGGGCGTGTAGACATAAGTGCACAGgtttgttcctacctcttacttttgttatgctttatgtgagtcatgtctgttaaaaacaacttaggaggaactaagtgtcttcgatattaagaaagaaatt...
species | Zea mays |
transcript | GRMZM2G147450_T02 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: ATCACCCTGTCTGTGATCTCCGTAGTGGACGTGTAGACATAAGTGCACAG AACCATAACTACGCAGTTGACCCAGAATCACTTCCAGAAGGAGCAGAAGTAEST: gi|21626214|gb|BQ621135.1|BQ621135
genomic: ATCACCCTGTCTGTGATCTCCGTAGTGGGCGTGTAGACATAAGTGCACAGgtttgttcct ... ttccatgtagAACCATAACTACGCAGTTGACCCAGAATCACTTCCAGAAGGAGCAGAAGTA
EST: ATCACCCTGTCTGTGATCTCCGTAGTGGACGTGTAGACATAAGTGCACAG AACCATAACTACGCAGTTGACCCAGAATCACTTCCAGAAGGAGCAGAAGTAEST: gi|148969715|gb|EE020587.2|EE020587
genomic: ATCACCCTGTCTGTGATCTCCGTAGTGGGCGTGTAGACATAAGTGCACAGgtttgttcct ... ttccatgtagAACCATAACTACGCAGTTGACCCAGAATCACTTCCAGAAGGAGCAGAAGTA
EST: ATCACCCTGTCTGTGATCTCCGTAGTGGGCGTGTAGACATAAGTGCACAG AACCATAACTACGCAGTTGACCCAGAATCACTTCCAGAAGGAGCAGAAGTAEST: gi|6021531|gb|AW066459.1|AW066459
genomic: ATCACCCTGTCTGTGATCTCCGTAGTGGGCGTGTAGACATAAGTGCACAGgtttgttcct ... ttccatgtagAACCATAACTACGCAGTTGACCCAGAATCACTTCCAGAAGGAGCAGAAGTA
EST: ATCACCCTGTCTGTGATCTCCGTAGTGGACGTGTAGACATAAGTGCACAG AACCATAACTACGCAGTTGACCCAGAATCACTTCCAGAAGGAGCAGAAGTAEST: gi|211486296|gb|FL444470.1|FL444470
genomic: ATCACCCTGTCTGTGATCTCCGTAGTGGGCGTGTAGACATAAGTGCACAGgtttgttcct ... ttccatgtagAACCATAACTACGCAGTTGACCCAGAATCACTTCCAGAAGGAGCAGAAGTA
EST: TGTCTGTGATCTCCGTAGTGGACGTGTAGACATAAGTGCACAG AACCATAACTACGCAGTTGACCCAGAATCACTTCCAGAAGGAGCAGAAGTAEST: gi|20301382|gb|BQ164325.1|BQ164325
genomic: TGTCTGTGATCTCCGTAGTGGGCGTGTAGACATAAGTGCACAGgtttgttcct ... ttccatgtagAACCATAACTACGCAGTTGACCCAGAATCACTTCCAGAAGGAGCAGAAGTA
EST: ATCACCCTGTCTGTGATCTCCGTAGTGGACGTGTAGACATAAGTGCACAG AACCATAACTACGCAGTTGACCCAGAATCACTTCCAGAAGGAGCAGAAGTAEST: gi|37392466|gb|CF633484.1|CF633484
genomic: ATCACCCTGTCTGTGATCTCCGTAGTGGGCGTGTAGACATAAGTGCACAGgtttgttcct ... ttccatgtagAACCATAACTACGCAGTTGACCCAGAATCACTTCCAGAAGGAGCAGAAGTA
EST: ATCACCCTGTCTGTGATCTCCGTAGTGGACGTGTAGACATAAGTGCACAG AACCATAACTACGCAGTTGACCCAGAATCACTTCCAGAAGGAGCAGAAGTAEST: gi|20802593|gb|BQ293643.1|BQ293643
genomic: ATCACCCTGTCTGTGATCTCCGTAGTGGGCGTGTAGACATAAGTGCACAGgtttgttcct ... ttccatgtagAACCATAACTACGCAGTTGACCCAGAATCACTTCCAGAAGGAGCAGAAGTA
EST: ATCACCCTGTCTGTGATCTCCGTAGTGGACGTGTAGACATAAGTGCACAG AACCATAACTACGCAGTTGACCCAGAATCACTTCCAGAAGGAGCAGAAGTAEST: gi|148934461|gb|EC878500.2|EC878500
genomic: ATCACCCTGTCTGTGATCTCCGTAGTGGGCGTGTAGACATAAGTGCACAGgtttgttcct ... ttccatgtagAACCATAACTACGCAGTTGACCCAGAATCACTTCCAGAAGGAGCAGAAGTA
EST: ATCACCCTGTCTGTGATCTCCGTAGTGGGCGTGTAGACATAAGTGCACAG AACCATAACTACGCAGTTGACCCAGAATCACTTCCAGAAGGAGCAGAAGTAEST: gi|45846984|gb|CN070927.1|CN070927
genomic: ATCACCCTGTCTGTGATCTCCGTAGTGGGCGTGTAGACATAAGTGCACAGgtttgttcct ... ttccatgtagAACCATAACTACGCAGTTGACCCAGAATCACTTCCAGAAGGAGCAGAAGTA
EST: ATCACCCTGTCTGTGATCTCCGTAGTGGACGTGTAGACATTAGTGCACAG AGCCATAACTACGCAGTTGACCCAGAATCACTTCCAGAAGGAGCAGAAGTAEST: gi|20208474|gb|BQ134563.1|BQ134563
genomic: ATCACCCTGTCTGTGATCTCCGTAGTGGGCGTGTAGACATAAGTGCACAGgtttgttcct ... ttccatgtagAACCATAACTACGCAGTTGACCCAGAATCACTTCCAGAAGGAGCAGAAGTA
EST: ATCACCCTGTCTGTGATCTCCGTAGTGGACGTGTAGACATAAGTGCCCAG AACCATAACTACGCAGTTGACCCAGAATCACTTCCAGAAGGAGCAGAAGTAEST: gi|5670854|gb|AI932117.1|AI932117
genomic: ATCACCCTGTCTGTGATCTCCGTAGTGGGCGTGTAGACATAAGTGCACAGgtttgttcct ... ttccatgtagAACCATAACTACGCAGTTGACCCAGAATCACTTCCAGAAGGAGCAGAAGTA
EST: ATCACCCTGTCTGTGATCTCCGTAGTGGACGTGTAGACATAAGTGCACAG AACCATAACTACGCAGTTGACCCAGAATCACTTCCAGAAGGAGCAGAAGTAEST: gi|211122171|gb|FL463027.1|FL463027
genomic: ATCACCCTGTCTGTGATCTCCGTAGTGGGCGTGTAGACATAAGTGCACAGgtttgttcct ... ttccatgtagAACCATAACTACGCAGTTGACCCAGAATCACTTCCAGAAGGAGCAGAAGTA
EST: ATCACCCTGTCTGTGATCTCCGTAGTGGACGTGTAGACATAAGTGCACAG AACCATAACTACGCAGTTGACCCAGAATCACTTCCAGAAGGAGTAGAAGTHEST: gi|21760053|gb|BQ635594.1|BQ635594
genomic: ATCACCCTGTCTGTGATCTCCGTAGTGGGCGTGTAGACATAAGTGCACAGgtttgttcct ... ttccatgtagAACCATAACTACGCAGTTGACCCAGAATCACTTCCAGAAGGAGCAGAAGTA
EST: ATCACCCTGTCTGTGATCTCCGTAGTGGACGTGTAGACATAAGTGCACAG AACCATAACTACGCAGTTGACCCAGAATCACTTCCAGAAGGAGCAGAAGTAEST: gi|149102853|gb|EE288195.2|EE288195
genomic: ATCACCCTGTCTGTGATCTCCGTAGTGGGCGTGTAGACATAAGTGCACAGgtttgttcct ... ttccatgtagAACCATAACTACGCAGTTGACCCAGAATCACTTCCAGAAGGAGCAGAAGTA
EST: ATCACCCTGTCTGTGATCTCCGTAGTGGGCGTGTAGACATAAGTGCACAG AACCATAACTACGCAGTTGACCCAGAATCACTTCCAGAAGGAGCAGAAGTAEST: gi|21759841|gb|BQ635382.1|BQ635382
genomic: ATCACCCTGTCTGTGATCTCCGTAGTGGGCGTGTAGACATAAGTGCACAGgtttgttcct ... ttccatgtagAACCATAACTACGCAGTTGACCCAGAATCACTTCCAGAAGGAGCAGAAGTA
EST: ATCACCCTGTCTGTGATCTCCGTAGTGGACGTGTAGACATAAGTGCACAG AACCATAACTACGCAGTTGACCCAGAATCACTTCCAGAAGGAGCAGAAGTAEST: gi|74245055|gb|DT652969.1|DT652969
genomic: ATCACCCTGTCTGTGATCTCCGTAGTGGGCGTGTAGACATAAGTGCACAGgtttgttcct ... ttccatgtagAACCATAACTACGCAGTTGACCCAGAATCACTTCCAGAAGGAGCAGAAGTA
EST: ATCACCCTGTCTGTGATCTCCGTAGTGGGCGTGTAGACATAAGTGCACAG AACCATAACTACGCAGTTGACCCAGAATCACTTCCAGAAGGAGCAGAAGTAEST: gi|78544147|gb|DV621645.1|DV621645
genomic: ATCACCCTGTCTGTGATCTCCGTAGTGGGCGTGTAGACATAAGTGCACAGgtttgttcct ... ttccatgtagAACCATAACTACGCAGTTGACCCAGAATCACTTCCAGAAGGAGCAGAAGTA
EST: ATCACCCTGTCTGTGATCTCCGTAGTGGACGTGTAGACATAAGTGCACAG AACCATAACTACGCAGTTGACCCAGAATCACTTCCAGAAGGAGCAGAAGTA
genomic: ATCACCCTGTCTGTGATCTCCGTAGTGGGCGTGTAGACATAAGTGCACAGgtttgttcct ... ttccatgtagAACCATAACTACGCAGTTGACCCAGAATCACTTCCAGAAGGAGCAGAAGTA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGCGCTTGGTGGGAAGACATTTAAAATGAAATTTGGTCATCATGGTGGGAATCACCCTGTCTGTGATCTCCGTAGTGGGCGTGTAGACATAAGTGCACAGgtttgttcctacctcttacttttgttatgctttatgtgagtcatgtctgttaaaaacaacttaggaggaactaagtgtcttcgatattaagaaagaaatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaaacaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aagaaaga