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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGGGGAATATGGAACAGCAGATGGAAAATATTCAGCTTCTTATATTATTGGGAAGTTGTGTGATGTGGCAGAGGCCCACCTCACTGATGACACTGTCAAGgtatgcattttgactttgtagtgtagctcatgtttcattggtcatttgccttggcctccttataaccttcatgctatatgctgaaatatgacaataggtt...

Basic information

species Zea mays
transcript GRMZM2G146697_T03
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G146697_T03 (Zea mays), 5'ss of exon 8
lower sequence: LOC_Os01g68750.1 (Oryza sativa), 5'ss of exon 8
GGGGGAATATGGAACAGCAGATGGAAAATATTCAGCTTCTTATATTATTGGGAAGTTGTGTGATGTGGCAGAGGCCCACCTCACTGATGACACTGTCAAGgtatgcattttgactttgtagtgtagctcatgtttcattggtcatttgccttggcctccttataaccttcatgctatatgctgaaatatgacaata--ggtt------
||| |||||||||||||||||||| |||||||||||||| ||||||||||||||| ||| ||||||||||||||||||||  |||||||||||||||| |||||||         ||||||| |||||  |||| || || | |||     |||||   |  ||   | |||||| | || |||||||| | ||||  | |       
GGGAGAATATGGAACAGCAGATGGGAAATATTCAGCTTCATATATTATTGGGAAGCTGTATGATGTGGCAGAGGCCCACCCAACTGATGACACTGTCAGGgtatgc-------tcttgtagtttagcttttgttccactg-ttattacatgtggcccattgctactgtgcatgctctgtgttgaaatattataatatagatccaagtt

upper sequence: GRMZM2G146697_T03 (Zea mays), 5'ss of exon 8
lower sequence: GLYMA01G35650.1 (Glycine max), 5'ss of exon 7
GGGGGAATATGGAACAGCAGATGGAAAATATTCAGCTTCTTATATTATTGGGAAGTTGTGTGATGTGGCAGAGGCCCACCTCACTGATGACACTGTCAAGgtatgcattttgactttgtagtgtagctcatgtttcattggtcatttgccttggcctccttataaccttcatgctatatgctga-aatatgacaataggtt
||||||||| ||||||||||||||||| ||||| ||||||||||| | ||||||||| |||||  | ||||||||  |   || |||||| | ||| |||||||  |||   |      | | |  || ||     |  ||  |   |      |       | |     |   |   ||||   |||||    | ||   
GGGGGAATACGGAACAGCAGATGGAAAGTATTCTGCTTCTTATATCAGTGGGAAGTTATGTGACATTGCAGAGGCATATTCCAATGATGAAAATGTTAAGgtatttattagaagccaacact-tccctaataaggaaaggggaaaaggttaaaacacataatttagggagactttggttgcttttaatattgacacagtaa

upper sequence: GRMZM2G146697_T03 (Zea mays), 5'ss of exon 8
lower sequence: GLYMA16G08320.1 (Glycine max), 5'ss of exon 7
GGGGGAATATGGAACAGCAGATGGAAAATATTCAGCTTCTTATATTATTGGGAAGTTGTGTGATGTGGCAGAGGCCCACCTCACTGATGACACTGTCAAGgtatgcattttgactttgtagtgtagctcatgtttcattggtcatttgccttggcctccttataaccttcatgctatatgctgaaatatgacaataggtt-
 ||||||||||| || || |||||||||||||| ||||| ||||| | ||||||| | |||||||| ||||||||  |    | |||||| ||||| |||||||  || |        |  | | | |  ||| | | ||        | ||   ||  | |  |       |  |  |  ||| |       |||     
TGGGGAATATGGCACTGCTGATGGAAAATATTCTGCTTCGTATATCACTGGGAAGCTATGTGATGTTGCAGAGGCATATTCAAATGATGAAACTGTTAAGgtatttatctaattccaattattttgttt-tgtattagtgaaatccaactttttactgataaggagagaggggaaaagtaatgataccctttgatattgac

upper sequence: GRMZM2G146697_T03 (Zea mays), 5'ss of exon 8
lower sequence: GLYMA16G20260.1 (Glycine max), 5'ss of exon 7
GGGGGAATATGGAACAGCAGATGGAAAATATTCAGCTTCTTATATTATTGGGAAGTTGTGTGATGTGGCAGAGGCCCACCTCACTGATGACACTGTCAAGgtatgcattttgactttgtagtgtagctcatgtttcattggtcatttgccttggcctccttataaccttcatgctata--tgctgaaata--tgacaataggtt
|||||||||||| ||||| |||||||| ||||| ||||| ||||| | ||||||| | |||||||| ||||||||  |    | |||||| ||||| |||||||  || |     ||  | | ||  |  | ||  ||| || |  | |       | || ||||       |  | |  |    || ||  |  | |    ||
GGGGGAATATGGCACAGCTGATGGAAAGTATTCTGCTTCCTATATCACTGGGAAGCTATGTGATGTTGCAGAGGCATATTCAAATGATGAAACTGTTAAGgtatttatctaa---ttccaat-tattttgttttgtattagtgaaatccaacattttactgataagaagaggggaaaagttatcaaattaacttgctaccaatt

upper sequence: GRMZM2G146697_T03 (Zea mays), 5'ss of exon 8
lower sequence: GLYMA09G35240.1 (Glycine max), 5'ss of exon 7
GGGGGAATATGGAACAGCAGATGGAAAATATTCAGCTTCTTATATTATTGGGAAGTTGTGTGATGTGGCAGAGGCCCACCTCACTGATGACACTGTCAAGgtatgcattttgactttgtagtgtagctcatgtttcattggtcat---ttgccttggcctccttataaccttcatgctatatgctgaaatatgacaataggtt
||||||||||||||||| ||||||||| ||||| ||||| ||||| | ||||||||| |||||  | ||||||||  |   || |||||| | ||| |||||||  |||   |      | | |  || ||     |  ||  |    ||    ||      |||  |      || |   |  | | || |||||  ||   
GGGGGAATATGGAACAGTAGATGGAAAGTATTCTGCTTCCTATATCAGTGGGAAGTTATGTGACATTGCAGAGGCATATTCCAATGATGAAAATGTTAAGgtatttattggaagccaacact-tcccttataaggaaagggggaaaagttaaaatgcataatttaggaatactttgattgcttttaatat-tgacatcagta-

upper sequence: GRMZM2G146697_T03 (Zea mays), 5'ss of exon 8
lower sequence: AT1G31730.1 (Arabidopsis thaliana), 5'ss of exon 7
GGGGGAATATGGAACAGCAGATGGAAAATATTCAGCTTCTTATATTATTGGGAAGTTGTGTGATGTGGCAGAGGCCCACCTCACTGATGACACTGTCAAGgtatgcattttgactttgtagtgtagctcat-gtttcattggtcatttgccttggcctccttataaccttcatgc-tatatgctgaaatatgacaataggtt
||| |||||||| ||||| ||||| |||||||| || || ||||||| ||| ||| |||| ||||||||||| ||  ||   | |||||| ||||| ||||||| |  ||   ||||  | | |   |||  ||   |    | |  ||| | |   | ||  |    |   |   | ||||||| | | |      |    
GGGAGAATATGGCACAGCTGATGGGAAATATTCTGCCTCCTATATTAGTGGAAAGCTGTGCGATGTGGCAGATGCATACTCAAGTGATGAAACTGTAAAGgtat-ctcttcagcttttaaatattattcaccgtgaaaacctttacgtgcttagctgttctggtcttttagttctgtgtatgctgtagtttcttgtaacac-

upper sequence: GRMZM2G146697_T03 (Zea mays), 5'ss of exon 8
lower sequence: Vv02s0087g00690.t01 (Vitis vinifera), 5'ss of exon 8
GGGGGAATATGGAACAGCAGATGGAAAATATTCAGCTTCTTATATTATTGGGAAGTTGTGTGATGTGGCAGAGGCCCACCTCACTGATGACACTGTCAAGgtatgcattttgactttgtagtgtagctcatgttt-cattggtcatttgccttggcctcctta--taacct--tcatgctatatgctgaaatatgacaataggtt-
||| || |||||||| || | |||||| ||||| ||||| ||||| | ||| ||||| ||||||||||||||||||||    |   |||||||||| ||||||| |  |  | |||| |        |  ||||| |||||||  |||| |  |   |  ||    ||||   |   | |||||| |    | |  | |     | 
GGGTGAGTATGGAACTGCGGGTGGAAAGTATTCTGCTTCCTATATCACTGGAAAGTTATGTGATGTGGCAGAGGCCCATTCAAGCAATGACACTGTTAAGgtattc-ctcagcctttatga---gttttgtgtttgcattggt--tttgtcaggtttttattggtcaaccaagtttagttatatggtttggtttttctagttactg

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|9952284|gb|BE638867.1|BE638867
EST:     GGAAGTTGTGTGATGTGGCAGAGGCCCACCTCACTGATGACACTGTCAAG                         GCATATGCGATCTCAGCAATTCTGAAGACATTTGCGTTTGAAATCACTCTT
genomic: GGAAGTTGTGTGATGTGGCAGAGGCCCACCTCACTGATGACACTGTCAAGgtatgcattt ... cttatttaagGCATATGCGATCTCAGCAATTCTGAAGACATTTGCGTTTGAAATCACTCTT