Sequence
atgc intronic sequence ATGC exonic sequenceCATTGGTCTTGAGCCACGCCTTAGCCACGTGTCAGCTGTGGAGCCTACTCTCGCCCCAGTTGCAGTTGAGCGTACAATGACGACAAGAGCTGCAGCTTCTgtatttttcttttgatttcctttatatctctctcacagttttattcccaactggatcaatgtttcttttagtctgttttaggtgccgtgacaaataaacttttcgccactctaaactaagaattttccaacacggtttgttacag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G146118_T02 (Zea mays), 5'ss of exon 8
lower sequence: LOC_Os07g29450.1 (Oryza sativa), 5'ss of exon 8
CATTGGTCTTGAGCCACGCCTTAGCCACGTGTCAGCTGTGGAGCCTACTCTCGCCCCAGTTGCAGTTGAGCGTACAATGACGACAAGAGCTGCAGCTTCTgtatttttcttttgatttcctttatatctctctcacagttttattcccaactggatcaatgtttcttt-tagtctgttttaggtgccgtgacaaataaacttt-tcgccactctaaactaagaattttc-caacacggtttgttacag
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TATTGATCTTGAGCCTCGCCTAAGCCATACATCAGCTGTGGAGCCTACACTTGCTCCGGTTGCGGTTGAGCGCACAATGACAACAAGAGCAGCAGCTTCTgtaattttct----acctcctctttctgttatcaatgttttcatttcaaagacattttacttcactttgcaacatttagtttttgttatcatgagcaatctttgtctatattctgtactaaggtttttttcaatataatctat-gcag
upper sequence: GRMZM2G146118_T02 (Zea mays), 5'ss of exon 8
lower sequence: Vv07s0130g00270.t01 (Vitis vinifera), 5'ss of exon 7
CATTGGTCTTGAGCCACGCCTTAGCCACGTGTCAGCTGTGGAGCCTACTCTCGCCCCAGTTGCAGTTGAGCGTACAATGACGACAAGAGCTGCAGCTTCTgtatttttcttttgatttcctttatatctctctcacagttttattcccaactggatcaatgtttcttttagtctgttttaggtgccgtgacaaataaacttttcgccactctaaactaagaattttccaacacggtttgttacag
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CATTGATCTTGAACCTTGTCTAACACATACATCAACTGTGGAGCCTACTCTTGCTCCAGTGGCTGTTGAGCGTACAATGACTACAAGGGCAGCTGCTTCGgtattacatcatatattttatcaaaatcatcttt----tgctatgtgtacttgcg--aattttctttctcctttgtctccaacattctttgtcctgggtttgtatg---------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|60397960|gb|DN230776.1|DN230776EST: TCGCCCCAGTTGCAGTTGAGCGTACAATGACGACAAGAGCTGCAGCTTCT AATGCATTGCGGCAACAAAGATTTGTCCGTGAAGTGACTATACAGTACAAT
genomic: TCGCCCCAGTTGCAGTTGAGCGTACAATGACGACAAGAGCTGCAGCTTCTgtatttttct ... tttgttacagAATGCATTGCGGCAACAAAGATTTGTCCGTGAAGTGACTATACAGTACAAT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CATTGGTCTTGAGCCACGCCTTAGCCACGTGTCAGCTGTGGAGCCTACTCTCGCCCCAGTTGCAGTTGAGCGTACAATGACGACAAGAGCTGCAGCTTCTgtatttttcttttgatttcctttatatctctctcacagttttattcccaactggatcaatgtttcttttagtctgttttaggtgccgtgacaaataaacttttcgccactctaaactaagaattttccaacacggtttgttacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT