Sequence
atgc intronic sequence ATGC exonic sequenceGTGGATGCAGCACTCATAGCTACTGGAAGGGCACCCTTCACCAAAGGACTTGGCTTGGAAAATgtaagtacatggaaatggttgctatcagaattcacaagttttaaatatggtagcatccaaaacatgcccttttatacag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G145595_T01 (Zea mays), 5'ss of exon 8
lower sequence: LOC_Os01g23610.2 (Oryza sativa), 5'ss of exon 8
GTGGATGCAGCACTCATAGCTACTGGAAGGGCACCCTTCACCAAAGGACTTGGCTTGGAAAATgtaagtacatggaaatggttgctatcagaatt-cacaagttttaaatatggtagcatccaaaacatgcccttttatacag
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GTGGATGCAGCTCTCATAGCTACCGGAAGGGCACCGTTCACCAAAGGGCTTGGCTTGGAAAATgtgagcacacg-aaatatttgcttctgtaattatatgaaaattgt-tatagttacatataaaataccattgattct-cag
upper sequence: GRMZM2G145595_T01 (Zea mays), 5'ss of exon 8
lower sequence: GLYMA17G03560.1 (Glycine max), 5'ss of exon 8
GTGGATGCAGCACTCATAGCTACTGGAAGGGCACCCTTCACCAAAGGACTTGGCTTGGAAAATgtaagtacat--ggaaatggttgctatcagaattcacaagtttt----aaatatggtagcatccaaaacatgcc--ctttta--tacag
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GTGGATGCTGCACTAATAGCAACTGGAAGGGCTCCGTTCACACAAGGTCTTGGATTGGAGAATgtaagcaattccgacagagatgtgctttaggattaggagattttctccaaaggaagtaattgtatatttttggtaacttttacctacag
upper sequence: GRMZM2G145595_T01 (Zea mays), 5'ss of exon 8
lower sequence: AT3G16950.1 (Arabidopsis thaliana), 5'ss of exon 8
GTGGATGCAGCACTCATAGCTACTGGAAGGGCACCCTTCACCAAAGGACTTGGCTTGGAAAATgtaagtacatggaaatggttgctatc----agaattcacaagtt--tta----aatatggt-agcatccaaaacatgcccttttatacag--------------
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GTAGATGCTGCTCTTATTGCTACTGGGAGAGCTCCATTCACCAATGGACTTGGCTTGGAAAATgtatg-aaatgacactaaatcccaccttttagtattgtcattttggttaccagagaatgtttagttgtcagaaaattaaccttgaagctgtcatctcaatgcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|13249876|gb|BG360781.1|BG360781EST: TCATAGCTACTGGAAGGGCACCCTTCACCAAAGGACTTGGCTTGGAAAAT ATCAATGTCGTTACACAACAAGGTTTTGTTCCTGTTGATGAGCGGATGCAA
genomic: TCATAGCTACTGGAAGGGCACCCTTCACCAAAGGACTTGGCTTGGAAAATgtaagtacat ... ttttatacagATCAATGTCGTTACACAACAAGGTTTTGTTCCTGTTGATGAGCGGATGCAA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTGGATGCAGCACTCATAGCTACTGGAAGGGCACCCTTCACCAAAGGACTTGGCTTGGAAAATgtaagtacatggaaatggttgctatcagaattcacaagttttaaatatggtagcatccaaaacatgcccttttatacag
- - - - - - - - - - - TGGAAG