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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTATTTGATACGCTCAGGATAATTATGGTTGTATTGGGCATGACATTTGTCTTTGTTGGGATCTCCTTGCTAGCACCCGATGACACTAAAGgtttgtaaaaggttgattttcatgtgctttcacacagaagattttgactcttggacaattgtcaccag

Basic information

species Zea mays
transcript GRMZM2G144254_T04
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G144254_T04 (Zea mays), 5'ss of exon 8
lower sequence: LOC_Os02g31874.1 (Oryza sativa), 5'ss of exon 11
GTATTTGATACGCTCAGGATAATTATGGTTGTATTGGGCATGACATTTGTCTTTGTTGGGATCTCCTTGCTAGCACCCGATGACACTAAAGgtttgtaaaaggttgattttcatgtgctttcacacagaagattttgactct---tggacaattgtcaccag
||||||||||| || |||||| | ||| |||||||||||||||||| ||||||| | || |||||||| || |||||||| |||| ||||||||||| ||  ||| | |  | |||||||| ||| | |      ||||| |   | || |||| |   |||
GTATTTGATACCCTGAGGATAGTGATGTTTGTATTGGGCATGACATCTGTCTTTATAGGCATCTCCTTACTGGCACCCGACGACAGTAAAGgtttgtgaa--gttcactgccgtgtgcttttacagaaatatacatgactttaacttgagaattcttggcag

upper sequence: GRMZM2G144254_T04 (Zea mays), 5'ss of exon 8
lower sequence: LOC_Os02g31874.2 (Oryza sativa), 5'ss of exon 11
GTATTTGATACGCTCAGGATAATTATGGTTGTATTGGGCATGACATTTGTCTTTGTTGGGATCTCCTTGCTAGCACCCGATGACACTAAAGgtttgtaaaaggttgattttcatgtgctttcacacagaagattttgactct---tggacaattgtcaccag------------
||||||||||| || |||||| | ||| |||||||||||||||||| ||||||| | || |||||||| || |||||||| |||| ||||||||||| ||  ||| | |  | |||||||| ||| | |      ||||| |   | || |||| |   |||            
GTATTTGATACCCTGAGGATAGTGATGTTTGTATTGGGCATGACATCTGTCTTTATAGGCATCTCCTTACTGGCACCCGACGACAGTAAAGgtttgtgaa--gttcactgccgtgtgcttttacagaaatatacatgactttaacttgagaattcttggcagttgacaccaaag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|60352118|gb|DN219091.1|DN219091
EST:     GACATTTGTCTTTGTTGGGATCTCCTTGCTAGCACCCGATGACACTAAAG                         CTGATACGAAAGATGGTTCGAGCACTGCCGAGGAATCTATAATTGATATGG
genomic: GACATTTGTCTTTGTTGGGATCTCCTTGCTAGCACCCGATGACACTAAAGgtttgtaaaa ... ttgtcaccagCTGATACGAAAGATGGTTCGAGCACTGCCGAGGAATCTATAATTGATATGG
EST: gi|78022546|gb|DV490933.1|DV490933
EST:     GACATTTGTCTTTGTTGGGATCTCCTTGCTAGCACCCGATGACACTAAAG                         CTGATACGAAAGATGGTTCGAGCACTGCCGAGGAATCTATAATTGATATGG
genomic: GACATTTGTCTTTGTTGGGATCTCCTTGCTAGCACCCGATGACACTAAAGgtttgtaaaa ... ttgtcaccagCTGATACGAAAGATGGTTCGAGCACTGCCGAGGAATCTATAATTGATATGG