1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GCATAGCAGGAAACCCTGGTTAAAGTTTATGAACGCAGATAACCAGCACCTAGTGTCTCCTGAGgtgtgtgctaatgtctctcttgtattttaaataggcgtaactagcatttgattgatggctctcgactcctgacaggatccctttgtttatctctgtag
species | Zea mays |
transcript | GRMZM2G143602_T01 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: CCTGGTTAAAGTTTATGAACGCAGATAACCAGCACCTAGTGTCTCCTGAG GCCATAGATTTCCTTGACAAGCTTTTGCGTTATGATCATCAGGAGAGGCTTEST: gi|33103216|gb|CF063176.1|CF063176
genomic: CCTGGTTAAAGTTTATGAACGCAGATAACCAGCACCTAGTGTCTCCTGAGgtgtgtgcta ... atctctgtagGCCATAGATTTCCTTGACAAGCTTTTGCGTTATGATCATCAGGAGAGGCTT
EST: CCTGGTTAAAGTTTATGAACGCAGATAACCAGCACCTAGTGTCTCCTGAG GCCATAGATTTCCTTGACAAGCTTTTGCGTTATGATCATCAGGAGAGGCTTEST: gi|60396112|gb|DN228981.1|DN228981
genomic: CCTGGTTAAAGTTTATGAACGCAGATAACCAGCACCTAGTGTCTCCTGAGgtgtgtgcta ... atctctgtagGCCATAGATTTCCTTGACAAGCTTTTGCGTTATGATCATCAGGAGAGGCTT
EST: CCTGGTTAAAGTTTATGAACGCAGATAACCAGCACCTAGTGTCTCCTGAG GCCATAGATTTCCTTGACAAGCTTTTGCGTTATGATCATCAGGAGAGGCTTEST: gi|4680837|gb|AI629507.1|AI629507
genomic: CCTGGTTAAAGTTTATGAACGCAGATAACCAGCACCTAGTGTCTCCTGAGgtgtgtgcta ... atctctgtagGCCATAGATTTCCTTGACAAGCTTTTGCGTTATGATCATCAGGAGAGGCTT
EST: CCTGGTTAAAGTTTATGAACGCAGATAACCAGCACCTAGTGTCTCCTGAG GCCATAGATTTCCTTGACAAGCTTTTGCGTTATGATCATCAGGAGAGGCTTEST: gi|71770652|gb|DR968589.1|DR968589
genomic: CCTGGTTAAAGTTTATGAACGCAGATAACCAGCACCTAGTGTCTCCTGAGgtgtgtgcta ... atctctgtagGCCATAGATTTCCTTGACAAGCTTTTGCGTTATGATCATCAGGAGAGGCTT
EST: CCTGGTTAAAGTTTATGAACGCAGATAACCAGCACCTAGTGTCTCCTGAG GCCATAGATTTCCTTGACAAGCTTTTGCGTTATGATCATCAGGAGAGGCTTEST: gi|16377160|gb|BI991802.1|BI991802
genomic: CCTGGTTAAAGTTTATGAACGCAGATAACCAGCACCTAGTGTCTCCTGAGgtgtgtgcta ... atctctgtagGCCATAGATTTCCTTGACAAGCTTTTGCGTTATGATCATCAGGAGAGGCTT
EST: CCTGGTTAAAGTTTATGAACGCAGATAACCAGCACCTAGTGTCTCCTGAG GCCATAGATTTCCTTGACAAGCTTTTGCGTTATGATCATCAGGAGAGGCTTEST: gi|60395786|gb|DN228656.1|DN228656
genomic: CCTGGTTAAAGTTTATGAACGCAGATAACCAGCACCTAGTGTCTCCTGAGgtgtgtgcta ... atctctgtagGCCATAGATTTCCTTGACAAGCTTTTGCGTTATGATCATCAGGAGAGGCTT
EST: CCTGGTTAAAGTTTATGAACGCAGATAACCAGCACCTAGTGTCTCCTGAG GCCATAGATTTCCTTGACAAGCTTTTGCGTTATGATCATCAGGAGAGGCTTEST: gi|60343609|gb|DN210582.1|DN210582
genomic: CCTGGTTAAAGTTTATGAACGCAGATAACCAGCACCTAGTGTCTCCTGAGgtgtgtgcta ... atctctgtagGCCATAGATTTCCTTGACAAGCTTTTGCGTTATGATCATCAGGAGAGGCTT
EST: CCTGGTTAAAGTTTATGAACGCAGATAACCAGCACCTAGTGTCTCCTGAG GCCATAGATTTCCTTGACAAGCTTTTGCGTTATGATCATCAGGAGAGGCTTEST: gi|29576767|gb|CB616879.1|CB616879
genomic: CCTGGTTAAAGTTTATGAACGCAGATAACCAGCACCTAGTGTCTCCTGAGgtgtgtgcta ... atctctgtagGCCATAGATTTCCTTGACAAGCTTTTGCGTTATGATCATCAGGAGAGGCTT
EST: CCTGGTTAAAGTTTATGAACGCAGATAACCAGCACCTAGTGTCTCCTGAG GCCATAGATTTCCTTGACAAGCTTTTGCGTTATGATCATCAGGAGAGGCTTEST: gi|60340369|gb|DN207342.1|DN207342
genomic: CCTGGTTAAAGTTTATGAACGCAGATAACCAGCACCTAGTGTCTCCTGAGgtgtgtgcta ... atctctgtagGCCATAGATTTCCTTGACAAGCTTTTGCGTTATGATCATCAGGAGAGGCTT
EST: CCTGGTTAAAGTTTATGAACGCAGATAACCAGCACCTAGTGTCTCCTGAG GCCATAGATTTCCTTGACAAGCTTTTGCGTTATGATCATCAGGAGAGGCTTEST: gi|211466861|gb|FL187159.1|FL187159
genomic: CCTGGTTAAAGTTTATGAACGCAGATAACCAGCACCTAGTGTCTCCTGAGgtgtgtgcta ... atctctgtagGCCATAGATTTCCTTGACAAGCTTTTGCGTTATGATCATCAGGAGAGGCTT
EST: CCTGGT-AAAGTTTATGAACGCAGATAACCAGCACCTAGTGTCTCCTGAG GCCATAGATTTCCTTGACCAGCTTTTGGCGTTATGATCATCAGGAGAGGCTEST: gi|113703875|gb|EE681379.1|EE681379
genomic: C-TGGTTAAAGTTTATGAACGCAGATAACCAGCACCTAGTGTCTCCTGAGgtgtgtgcta ... atctctgtagGCCATAGATTTCCTTGACAAGCTTTTG-CGTTATGATCATCAGGAGAGGCT
EST: CCTGGTTAAAGTTTATGAACGCAGATAACCAGCACCTAGTGTCTCCTGAG GCCATAGATTTCCTTGACAAGCTTTTGCGTTATGATCATCAGGAGAGGCTTEST: gi|78073838|gb|DV502272.1|DV502272
genomic: CCTGGTTAAAGTTTATGAACGCAGATAACCAGCACCTAGTGTCTCCTGAGgtgtgtgcta ... atctctgtagGCCATAGATTTCCTTGACAAGCTTTTGCGTTATGATCATCAGGAGAGGCTT
EST: CCTGGTTAAAGTTTATGAACGCAGATAACCAGCACCTAGTGTCTCCTGAG GCCATAGATTTCCTTGACAAGCTTTTGCGTTATGATCATCAGGAGAGGCTTEST: gi|60395745|gb|DN228615.1|DN228615
genomic: CCTGGTTAAAGTTTATGAACGCAGATAACCAGCACCTAGTGTCTCCTGAGgtgtgtgcta ... atctctgtagGCCATAGATTTCCTTGACAAGCTTTTGCGTTATGATCATCAGGAGAGGCTT
EST: CCTGGTTAAAGTTTATGAATGCAGATAACCAGCACCTAGTGTCTCCTGAG GCCATAGATTTCCTTGACAAGCTTTTGCGTTATGATCATCAGGAGAGGCTTEST: gi|16379175|gb|BI992806.1|BI992806
genomic: CCTGGTTAAAGTTTATGAACGCAGATAACCAGCACCTAGTGTCTCCTGAGgtgtgtgcta ... atctctgtagGCCATAGATTTCCTTGACAAGCTTTTGCGTTATGATCATCAGGAGAGGCTT
EST: CCTGGTTAAAGTTTATGAACGCAGATAACCAGCACCTAGTGTCTCCTGAG GCCATAGATTTCCCTGACAAGCTTTTGCGTTATGATCATCAGGAGAGGCTT
genomic: CCTGGTTAAAGTTTATGAACGCAGATAACCAGCACCTAGTGTCTCCTGAGgtgtgtgcta ... atctctgtagGCCATAGATTTCCTTGACAAGCTTTTGCGTTATGATCATCAGGAGAGGCTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCATAGCAGGAAACCCTGGTTAAAGTTTATGAACGCAGATAACCAGCACCTAGTGTCTCCTGAGgtgtgtgctaatgtctctcttgtattttaaataggcgtaactagcatttgattgatggctctcgactcctgacaggatccctttgtttatctctgtag
- - - - - - - - - - - - - - - - - GCAGAT