1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
CAGGGGGCTTCCAATGCTGGAGGTGGTGCTGGTGGTGGACCACTTGATTTTCTTAGAAACAATCCACAGgttctcattttcatttttgccatttaagattttttggggtaattctattattacccctgcatacaaaaatatagtattagagaatacgatgcccatagta...
species | Zea mays |
transcript | GRMZM2G143462_T01 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: GAGGTGGTGCTGGTGGTGGACCACTTGATTTTCTTAGAAACAATCCACAG TTTCAAGCAGTTAGGGAAATGGTCCATACAAATCCACAAATTTTGCAGEST: gi|71764240|gb|DR962177.1|DR962177
genomic: GAGGTGGTGCTGGTGGTGGACCACTTGATTTTCTTAGAAACAATCCACAGgttctcattt ... tattttgcagTTTCAAGCAGTTAGGGAAATGGTCCATACAAATCCACAAATTTTGCAG
EST: GAGGTGGTGCTGGTGGTGGACCACTTGATTTT-TTAGAAACAATCCACAG TTTCAAGCAGTTAGGGAAATGGTCCATACAAATCCACAAATTTTGCAGEST: gi|19351385|gb|BM895917.1|BM895917
genomic: GAGGTGGTGCTGGTGGTGGACCACTTGATTTTCTTAGAAACAATCCACAGgttctcattt ... tattttgcagTTTCAAGCAGTTAGGGAAATGGTCCATACAAATCCACAAATTTTGCAG
EST: GAGGTGGTGCTGGTGGTGGACCACTTGATTTTCTTAGAAACAATCCACAG TTTCAAGCAGTTAGGGAAATGGTCCATACAAATCCACAAATTTTGCAGEST: gi|19822693|gb|BQ048717.1|BQ048717
genomic: GAGGTGGTGCTGGTGGTGGACCACTTGATTTTCTTAGAAACAATCCACAGgttctcattt ... tattttgcagTTTCAAGCAGTTAGGGAAATGGTCCATACAAATCCACAAATTTTGCAG
EST: GAGGTGGTGCTGGTGGTGGACCACTTGATTTTCTTAGAAACAATCCACAG TTTCAAGCAGTTAGGGAAATGGTCCATACAAATCCACAAATTTTGCAGEST: gi|22489727|gb|BU049650.1|BU049650
genomic: GAGGTGGTGCTGGTGGTGGACCACTTGATTTTCTTAGAAACAATCCACAGgttctcattt ... tattttgcagTTTCAAGCAGTTAGGGAAATGGTCCATACAAATCCACAAATTTTGCAG
EST: GAGGTGGTGCTGGTGGTGGACCACTTGATTTTCTTAGAAACAATCCACAG TTTCAAGCAGTTAGGGAAATGGTCCATACAAATCCACAAATTTTGCAGEST: gi|71764241|gb|DR962178.1|DR962178
genomic: GAGGTGGTGCTGGTGGTGGACCACTTGATTTTCTTAGAAACAATCCACAGgttctcattt ... tattttgcagTTTCAAGCAGTTAGGGAAATGGTCCATACAAATCCACAAATTTTGCAG
EST: GAGGTGGTGCTGGTGGTGGACCACTTGATTTTCTTAGAAACAATCCACAG TTTCAAGCAGTTAGGGAAATGGTCCATACAAATCCACAAATTTTGCAGEST: gi|32936801|gb|CF041620.1|CF041620
genomic: GAGGTGGTGCTGGTGGTGGACCACTTGATTTTCTTAGAAACAATCCACAGgttctcattt ... tattttgcagTTTCAAGCAGTTAGGGAAATGGTCCATACAAATCCACAAATTTTGCAG
EST: GAGGTGGTGCTGGTGGTGGACCACTTGATTTTCTTAGAAACAATCCACAG TTTCAAGCAGTTCGGGAAATGGEST: gi|71771538|gb|DR969475.1|DR969475
genomic: GAGGTGGTGCTGGTGGTGGACCACTTGATTTTCTTAGAAACAATCCACAGgttctcattt ... tattttgcagTTTCAAGCAGTTAGGGAAATGG
EST: GAGGTGGTGCTGGTGGTGGACCACTTGATTTTCTTAGAAACAATCCACAG TTTCAAGCAGTTAGGGAAATGGTCCATACAAATCCACAAATTTTGCAGEST: gi|71774846|gb|DR972724.1|DR972724
genomic: GAGGTGGTGCTGGTGGTGGACCACTTGATTTTCTTAGAAACAATCCACAGgttctcattt ... tattttgcagTTTCAAGCAGTTAGGGAAATGGTCCATACAAATCCACAAATTTTGCAG
EST: GAGGTGGTGCTGGTGGTGGACCACTTGATTTTCTTAGAAACAATCCACAG TTTCAAGCAGTTAGGGAAATGGTCCATACAAATCCACAAATTTTGCAGEST: gi|9731839|gb|BE510591.1|BE510591
genomic: GAGGTGGTGCTGGTGGTGGACCACTTGATTTTCTTAGAAACAATCCACAGgttctcattt ... tattttgcagTTTCAAGCAGTTAGGGAAATGGTCCATACAAATCCACAAATTTTGCAG
EST: GAGGTGGTGCTGGTGGTGGACCACTTGATTTTCTTAGAAACAATCCACAG TTTCAAGCAGTTCGGGAAATGGTCCATACAAATCCACAAATTTTGCAG
genomic: GAGGTGGTGCTGGTGGTGGACCACTTGATTTTCTTAGAAACAATCCACAGgttctcattt ... tattttgcagTTTCAAGCAGTTAGGGAAATGGTCCATACAAATCCACAAATTTTGCAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAGGGGGCTTCCAATGCTGGAGGTGGTGCTGGTGGTGGACCACTTGATTTTCTTAGAAACAATCCACAGgttctcattttcatttttgccatttaagattttttggggtaattctattattacccctgcatacaaaaatatagtattagagaatacgatgcccatagta
- - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - GGTGGA