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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGAAGAAGCTGAGATTGGCATGTGGGAGGCAGTAACATGGCTTGCGGTGTTAACATTCTGGGTGTCTTTTCTTTCTGAGTACCTAGTTAACGCCATTGAGgtattcttctctaattcaacaagaaaggataaaaaagtcagcttttattaatctgtaaaagtgaaattcgttaaaggtagctttctaaagttgacagaca...

Basic information

species Zea mays
transcript GRMZM2G143356_T01
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G143356_T01 (Zea mays), 5'ss of exon 8
lower sequence: LOC_Os04g55940.1 (Oryza sativa), 5'ss of exon 7
TGAAGAAGCTGAGATTGGCATGTGGGAGGCAGTAACATGGCTTGCGGTGTTAACATTCTGGGTGTCTTTTCTTTCTGAGTACCTAGTTAACGCCATTGAGgtattctt----ctctaattcaacaagaaaggataaaaaag--tcagcttttattaatctgtaaaagtga-aattcgttaaaggtagctttctaaagttgacagaca
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TGAAGAATCAGAGATTGGCATGTGGGAGTCCATAGCATGGCTCGCGATGTTGACATTATGGGTGTCTATTCTTTCTGAATACCTGGTTAATGCCATTGAGgtattccttctcttctaatttagaatgacagcacaaaaaaaaagtagctgttcttaatatgtgcaactgacaaatgattttttttggcctgttaaacttg-------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211410157|gb|FL246131.1|FL246131
EST:     TAACATTCTGGGTGTCTTTTCTTTCTGAGTACCTAGTTAACGCCATTGAG                         GGAGCATCTGATTCATTGAACCTACCGGTGGCTTTTATCAGTGTTATTTTG
genomic: TAACATTCTGGGTGTCTTTTCTTTCTGAGTACCTAGTTAACGCCATTGAGgtattcttct ... ttgttgtcagGGAGCATCTGATTCATTGAACCTACCGGTGGCTTTTATCAGTGTTATTTTG