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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACCTGGCAACAATAGTCCCAAATCTAGAACCTGCTGGCTTGGACCTTCTCTCTgtaagtcaaatggatttctgttgatgatcatgaccgctgcatcatatatatcctctctgtattgaattcacctgtttccgtctgctgacag

Basic information

species Zea mays
transcript GRMZM2G143213_T02
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G143213_T02 (Zea mays), 5'ss of exon 8
lower sequence: LOC_Os03g02680.1 (Oryza sativa), 5'ss of exon 6
GACCTGGCAACAATAGTCCCAAATCTAGAACCTGCTGGCTTGGACCTTCTCTCTgtaagtcaaatggatttctgttgatgatcatgaccgctgcatcatatatatcctctctgtattgaattcacct-gtttccgtctgctgacag
|| || ||||| || ||||| | ||| || |||||||| |||||||||||||||||||||| ||      ||   |  || |||| | |    ||| |||||   |        | |       ||| || ||  |   ||| |||
GATCTTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTCTCTgtaagtcgaacaccactcacctt-tgttcattagcatgtcataatataccccaaaaaaaaagtatcccatccttgtctcgtttcactgtcag

upper sequence: GRMZM2G143213_T02 (Zea mays), 5'ss of exon 8
lower sequence: LOC_Os03g01850.2 (Oryza sativa), 5'ss of exon 7
GACCTGGCAACAATAGTCCCAAATCTAGAACCTGCTGGCTTGGACCTTCTCTCTgtaagtcaaatggatttctgttgatgatcatgaccgctgcatcatatatatcctctctgtattgaatt----cacc--tgtttccgtctgctgacag
|  || ||||| || ||||| | ||| || |||||||| |||||||||||||||||||||| ||      ||   |  || |||| | |    ||| |||||   || |     |    | |    || |  ||| ||  |   ||| |||
GCTCTTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTCTCTgtaagtcgaacaccactcacctt-tgttcattagcatgtcataatatacccccccaaaaaagaagagtatatcatcgttgtctcgtttcactgtcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18166338|gb|BM336177.1|BM336177
EST:     TGGCAACAATAGTCCCAAATCTAGAACCTGCTGGCTTGGACCTTCTCTCT                         AAAATGCTTAGGTATGAGCCAAGCAAAAGAATCACAGCTAGGCAAGCACTT
genomic: TGGCAACAATAGTCCCAAATCTAGAACCTGCTGGCTTGGACCTTCTCTCTgtaagtcaaa ... ctgctgacagAAAATGCTTAGGTATGAGCCAAGCAAAAGAATCACAGCTAGGCAAGCACTT
EST: gi|18171982|gb|BM347370.1|BM347370
EST:     GAACCTGCTGGCTTGGACCTTCTCTCT                         AAAATGCTTAGGTATGAGCCAAGCAAAAGAATCACAGCTAGGCAAGCACTT
genomic: GAACCTGCTGGCTTGGACCTTCTCTCTgtaagtcaaa ... ctgctgacagAAAATGCTTAGGTATGAGCCAAGCAAAAGAATCACAGCTAGGCAAGCACTT
EST: gi|18163570|gb|BM333409.1|BM333409
EST:     GACCTGGCAACAATAGTCCCAAATCTAGAACCTGCTGGCTTGGACCTTCTCTCT        
genomic: CCAAATCTAGAACCTGCTGGCTTGGACCTTCTCTCTgtaagtcaaa ... ctgctgacagA
EST: gi|91051178|gb|EB161596.1|EB161596
EST:     TGGCAACAATAGTCCCAAATCTAGAACCTGCTGGCTTGGACCTTCTCTCT                         AAAATGCTTAGGTATGAGCCAAGCAAAAGAATCACAGCTAGGCAAGCACTC
genomic: TGGCAACAATAGTCCCAAATCTAGAACCTGCTGGCTTGGACCTTCTCTCTgtaagtcaaa ... ctgctgacagAAAATGCTTAGGTATGAGCCAAGCAAAAGAATCACAGCTAGGCAAGCACTT
EST: gi|18166704|gb|BM336543.1|BM336543
EST:     GACCTGGCAACAATAGTCCCAAATCTAGAACCTGCTGGCTTGGACCTTCTCTCT        
genomic: CCAAATCTAGAACCTGCTGGCTTGGACCTTCTCTCTgtaagtcaaa ... ctgctgacagA
EST: gi|17929629|gb|BM266589.1|BM266589
EST:     GACCTGGCAACAATAGTCCCAAATCTAGAACCTGCTGGCTTGGACCTTCTCTCT        
genomic: CCAAATCTAGAACCTGCTGGCTTGGACCTTCTCTCTgtaagtcaaa ... ctgctgacagA
EST: gi|60397283|gb|DN230099.1|DN230099
EST:     GACCTGGCAACAATAGTCCCAAATCTAGAACCTGCTGGCTTGGACCTTCTCTCT        
genomic: CCAAATCTAGAACCTGCTGGCTTGGACCTTCTCTCTgtaagtcaaa ... ctgctgacagA
EST: gi|12968998|gb|BG265943.1|BG265943
EST:     GACCTGGCAACAATAGTCCCAAATCTAGAACCTGCTGGCTTGGACCTTCTCTCT        
genomic: CCAAATCTAGAACCTGCTGGCTTGGACCTTCTCTCTgtaagtcaaa ... ctgctgacagA
EST: gi|5525594|gb|AI861487.1|AI861487
EST:     GACCTGGCAACAATAGTCCCAAATCTAGAACCTGCTGGCTTGGACCTTCTCTCT        
genomic: CCAAATCTAGAACCTGCTGGCTTGGACCTTCTCTCTgtaagtcaaa ... ctgctgacagA
EST: gi|5819371|gb|AI987577.1|AI987577
EST:     GACCTGGCAACAATAGTCCCAAATCTAGAACCTGCTGGCTTGGACCTTCTCTCT        
genomic: CCAAATCTAGAACCTGCTGGCTTGGACCTTCTCTCTgtaagtcaaa ... ctgctgacagA
EST: gi|21809566|gb|BQ667884.1|BQ667884
EST:     GACCTGGCAACAATAGTCCCAAATCTAGAACCTGCTGGCTTGGACCTTCTCTCT        
genomic: CCAAATCTAGAACCTGCTGGCTTGGACCTTCTCTCTgtaagtcaaa ... ctgctgacagA
EST: gi|78074515|gb|DV502949.1|DV502949
EST:     GACCTGGCAACAATAGTCCCAAATCTAGAACCTGCTGGCTTGGACCTTCTCTCT        
genomic: CCAAATCTAGAACCTGCTGGCTTGGACCTTCTCTCTgtaagtcaaa ... ctgctgacagA
EST: gi|18162372|gb|BM332211.1|BM332211
EST:     GACCTGGCAACAATAGTCCCAAATCTAGAACCTGCTGGCTTGGACCTTCTCTCT        
genomic: CCAAATCTAGAACCTGCTGGCTTGGACCTTCTCTCTgtaagtcaaa ... ctgctgacagA
EST: gi|110194217|gb|EC876115.1|EC876115
EST:     GACCTGGCAACAATAGTCCCAAATCTAGAACCTGCTGGCTTGGACCTTCTCTCT        
genomic: CCAAATCTAGAACCTGCTGGCTTGGACCTTCTCTCTgtaagtcaaa ... ctgctgacagA
EST: gi|37384260|gb|CF629190.1|CF629190
EST:     GACCTGGCAATAATAGTCCCAAATCTTGAACCTGCTGGCTTGGACCTTCTCTCT        
genomic: CCAAATCTAGAACCTGCTGGCTTGGACCTTCTCTCTgtaagtcaaa ... ctgctgacagA
EST: gi|18650116|gb|BM498935.1|BM498935
EST:     TGGCAACAATAGTCCCAAATCTTGAACCTGCTGGCTTGGACCTTCTCTGT                         AAAATGCTTCGGTATGAGCCAAGCAAAAGAATCACAGCTCGGCAAGCACTT
genomic: TGGCAACAATAGTCCCAAATCTAGAACCTGCTGGCTTGGACCTTCTCTCTgtaagtcaaa ... ctgctgacagAAAATGCTTAGGTATGAGCCAAGCAAAAGAATCACAGCTAGGCAAGCACTT
EST: gi|31910663|gb|CD651537.1|CD651537
EST:     GACCTGGCAACAATAGTCCCAAATCTAGAACCTGCTGGCTTGGACCTTCTCTCT        
genomic: CCAAATCTAGAACCTGCTGGCTTGGACCTTCTCTCTgtaagtcaaa ... ctgctgacagA
EST: gi|67024512|gb|CO453261.1|CO453261
EST:     GACCTGGCAACAATAGTCCCAAATCTAGAACCTGCTGGCTTGGACCTTCTCTCT        
genomic: CCAAATCTAGAACCTGCTGGCTTGGACCTTCTCTCTgtaagtcaaa ... ctgctgacagA
EST: gi|18167215|gb|BM337054.1|BM337054
EST:     GACCTGGCAACAATAGTCCCAAATCTAGAACCTGCTGGCTTGGACCTTCTCTCT        
genomic: CCAAATCTAGAACCTGCTGGCTTGGACCTTCTCTCTgtaagtcaaa ... ctgctgacagA
EST: gi|78025082|gb|DV493469.1|DV493469
EST:     GACCTGGCAACAATAGTCCCAAATCTAGAACCTGCTGGCTTGGACCTTCTCTCT        
genomic: CCAAATCTAGAACCTGCTGGCTTGGACCTTCTCTCTgtaagtcaaa ... ctgctgacagA
EST: gi|60398759|gb|DN231575.1|DN231575
EST:     GACCTGGCAACAATAGTCCCAAATCTAGAACCTGCTGGCTTGGACCTTCTCTCT        
genomic: CCAAATCTAGAACCTGCTGGCTTGGACCTTCTCTCTgtaagtcaaa ... ctgctgacagA
EST: gi|5847313|gb|AW000392.1|AW000392
EST:     GACCTGGCAACAATAGTCCCAAATCTAGAACCTGCTGGCTTGGACCTTCTCTCT        
genomic: CCAAATCTAGAACCTGCTGGCTTGGACCTTCTCTCTgtaagtcaaa ... ctgctgacagA
EST: gi|211268426|gb|FL478582.1|FL478582
EST:     GACCTGGCAACAATAGTCCCAAATCTAGAACCTGCTGGCTTGGACCTTCTCTCT        
genomic: CCAAATCTAGAACCTGCTGGCTTGGACCTTCTCTCTgtaagtcaaa ... ctgctgacagA
EST: gi|60394332|gb|DN227202.1|DN227202
EST:     GACCTGGCAACAATAGTCCCAAATCTAGAACCTGCTGGCTTGGACCTTCTCTCT        
genomic: CCAAATCTAGAACCTGCTGGCTTGGACCTTCTCTCTgtaagtcaaa ... ctgctgacagA
EST: gi|4967063|gb|AI692029.1|AI692029
EST:     GACCTGGCAACAATAGTCCCAAATCTAGAACCTGCTGGCTTGGACCTTCTCTCT        
genomic: CCAAATCTAGAACCTGCTGGCTTGGACCTTCTCTCTgtaagtcaaa ... ctgctgacagA
EST: gi|27575994|gb|CA998688.1|CA998688
EST:     GACCTGGCAACAATAGTCCCAAATCTAGAACCTGCTGGCTTGGACCTTCTCTCT        
genomic: CCAAATCTAGAACCTGCTGGCTTGGACCTTCTCTCTgtaagtcaaa ... ctgctgacagA
EST: gi|60394730|gb|DN227600.1|DN227600
EST:     GACCTGGCAACAATAGTCCCAAATCTAGAACCTGCTGGCTTGGACCTTCTCTCT        
genomic: CCAAATCTAGAACCTGCTGGCTTGGACCTTCTCTCTgtaagtcaaa ... ctgctgacagA
EST: gi|32916297|gb|CF021109.1|CF021109
EST:     GACCTGGCAACAATAGTCCCAAATCTAGAACCTGCTGGCTTGGACCTTCTCTCT        
genomic: CCAAATCTAGAACCTGCTGGCTTGGACCTTCTCTCTgtaagtcaaa ... ctgctgacagA
EST: gi|31909621|gb|CD651010.1|CD651010
EST:     GACCTGGCAACAATAGTCCCAAATCTAGAACCTGCTGGCTTGGACCTTCTCTCT        
genomic: CCAAATCTAGAACCTGCTGGCTTGGACCTTCTCTCTgtaagtcaaa ... ctgctgacagA
EST: gi|78093070|gb|DV521444.1|DV521444
EST:     GACCTGGCAACAATAGTCCCAAATCTAGAACCTGCTGGCTTGGACCTTCTCTCT        
genomic: CCAAATCTAGAACCTGCTGGCTTGGACCTTCTCTCTgtaagtcaaa ... ctgctgacagA
EST: gi|60398446|gb|DN231262.1|DN231262
EST:     GACCTGGCAATAATAGTCCCAAATCTTGAACCTGCTGGCTTGGACCTTCTCTCT        
genomic: CCAAATCTAGAACCTGCTGGCTTGGACCTTCTCTCTgtaagtcaaa ... ctgctgacagA
EST: gi|60344999|gb|DN211972.1|DN211972
EST:     GACCTGGCAACAATAGTCCCAAATCTAGAACCTGCTGGCTTGGACCTTCTCTCT        
genomic: CCAAATCTAGAACCTGCTGGCTTGGACCTTCTCTCTgtaagtcaaa ... ctgctgacagA