1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
AAGCCGATATCCTGTCAGTCTTAGATGTGCCTCCTGGGAAAATGGGACGAGTTATTGGCAGAAAGGGGTCAACGATAATGGCTGTGAAAGAATGTTGCAAgtaaatatattgagtctgattttgtaaacatcccatcatctatgctgttaaacttcattaatcctctgttattttttgttcctgtgggcag
species | Zea mays |
transcript | GRMZM2G142984_T01 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: GTTATTGGCAGAAAGGGGTCAACGATAATGGCTGTGAAAGAATGTTGCAA GGTTGAAATMCATATTGGTGGTGCTAAGGGGCCTCCAGACAGGEST: gi|17921527|gb|BM259178.1|BM259178
genomic: GTTATTGGCAGAAAGGGGTCAACGATAATGGCTGTGAAAGAATGTTGCAAgtaaatatat ... ctgtgggcagGGTTGAAATACATATTGGTGGTGCTAAGGGGCCTCCAGACAGG
EST: GTTATTGGCAGAAAGGGGTCAACGATAATGGCTGTGAAAGAATGTTGCAA GGTTGAAATACATATTGGTGGTGCTAAGGGGCCTCCAGACAGGEST: gi|149107225|gb|EE189109.2|EE189109
genomic: GTTATTGGCAGAAAGGGGTCAACGATAATGGCTGTGAAAGAATGTTGCAAgtaaatatat ... ctgtgggcagGGTTGAAATACATATTGGTGGTGCTAAGGGGCCTCCAGACAGG
EST: GTTATTGGCAGAAAGGGGTCAACGATAATGGCTGTGAAAGAATGTTGCAA GGTTGAAATACATATTGGTGGTGCTAAGGGGCCTCCAGCCAGGEST: gi|32859979|gb|CD999660.1|CD999660
genomic: GTTATTGGCAGAAAGGGGTCAACGATAATGGCTGTGAAAGAATGTTGCAAgtaaatatat ... ctgtgggcagGGTTGAAATACATATTGGTGGTGCTAAGGGGCCTCCAGACAGG
EST: GTTATTGGCAGAAAGGGGTCAACGATAATGGCTGTGAAAGAATGTTGCAA GGTTGAAATACATATTGGTGGTGCTAAGGGGCCTCCAGACAGGEST: gi|16926376|gb|BM079444.1|BM079444
genomic: GTTATTGGCAGAAAGGGGTCAACGATAATGGCTGTGAAAGAATGTTGCAAgtaaatatat ... ctgtgggcagGGTTGAAATACATATTGGTGGTGCTAAGGGGCCTCCAGACAGG
EST: GTTATTGGCAGAAAGGGGTCAACGATAATGGCTGTGAAAGAATGTTGCAA GGTTGAAATACATATTGGTGGTGCTAAGGGGCCTCCAGACAGGEST: gi|166430660|gb|EG077620.1|EG077620
genomic: GTTATTGGCAGAAAGGGGTCAACGATAATGGCTGTGAAAGAATGTTGCAAgtaaatatat ... ctgtgggcagGGTTGAAATACATATTGGTGGTGCTAAGGGGCCTCCAGACAGG
EST: GTTATTGGCAGAAAGGGGTCAACGATAATGGCTGTGAAAGAATGTTGCAA GGTTGAAATACATATTGGTGGTGCTAAGGGGCCTCCAGACAGGGTGTTCEST: gi|166533363|gb|EG236313.1|EG236313
genomic: GTTATTGGCAGAAAGGGGTCAACGATAATGGCTGTGAAAGAATGTTGCAAgtaaatatat ... ctgtgggcagGGTTGAAATACATATTGGTGGTGCTAAGGGGCCTCCAGACAGGGTGTTC
EST: GTTATTGGCAGAAAGGGGTCAACGATAATGGCTGTGAAAGAATGTTGCAA GGTTGAAATACATATTGGTGGTGCTAAGGGGCCTCCAGACAGGGTGTTCEST: gi|5070005|gb|AI737970.1|AI737970
genomic: GTTATTGGCAGAAAGGGGTCAACGATAATGGCTGTGAAAGAATGTTGCAAgtaaatatat ... ctgtgggcagGGTTGAAATACATATTGGTGGTGCTAAGGGGCCTCCAGACAGGGTGTTC
EST: GTTATTGGCAGAAAGGGGTCAACGATAATGGCTGTGAAAGAATGTTGCAA GGTTGAAATACATATTGGTGGTGCTAAGGGGCCTCCAGACAGGEST: gi|211383190|gb|FL437263.1|FL437263
genomic: GTTATTGGCAGAAAGGGGTCAACGATAATGGCTGTGAAAGAATGTTGCAAgtaaatatat ... ctgtgggcagGGTTGAAATACATATTGGTGGTGCTAAGGGGCCTCCAGACAGG
EST: GTTATTGGCAGAAAGGGGTCAACGATAATGGCTGTGAAAGAATGTTGCAA GGTTGAAATACATATTGGTGGTGCTAAGGGGCCTCCAGACAGGEST: gi|67015787|gb|CO444536.1|CO444536
genomic: GTTATTGGCAGAAAGGGGTCAACGATAATGGCTGTGAAAGAATGTTGCAAgtaaatatat ... ctgtgggcagGGTTGAAATACATATTGGTGGTGCTAAGGGGCCTCCAGACAGG
EST: GTTATTGGCAGAAAGGGGTCAACGATAATGGCTGTGAAAGAATGTTGCAA GGTTGAAATACATATTGGTGGTGCTAAGGGGCCTCCAGACAGGEST: gi|91867738|gb|EB399776.1|EB399776
genomic: GTTATTGGCAGAAAGGGGTCAACGATAATGGCTGTGAAAGAATGTTGCAAgtaaatatat ... ctgtgggcagGGTTGAAATACATATTGGTGGTGCTAAGGGGCCTCCAGACAGG
EST: GTTATTGGCAGAAAGGGGTCAACGATAATGGCTGTGAAAGAATGTTGCAA GGTTGAAATACATATTGGTGGTGCTAAGGGGCCTCCAGACAGGEST: gi|17921853|gb|BM259489.1|BM259489
genomic: GTTATTGGCAGAAAGGGGTCAACGATAATGGCTGTGAAAGAATGTTGCAAgtaaatatat ... ctgtgggcagGGTTGAAATACATATTGGTGGTGCTAAGGGGCCTCCAGACAGG
EST: GTTATTGGCAGAAAGGGGTCAACGATAATGGCTGTGAAAGAATGTTGCAA GGTTGAAATACATATTGGTGGTGCTAAGGGGCCTCCAGACAGGEST: gi|60344970|gb|DN211943.1|DN211943
genomic: GTTATTGGCAGAAAGGGGTCAACGATAATGGCTGTGAAAGAATGTTGCAAgtaaatatat ... ctgtgggcagGGTTGAAATACATATTGGTGGTGCTAAGGGGCCTCCAGACAGG
EST: GTTATTGGCAGAAAGGGGTCAACGATAATGGCTGTGAAAGAATGTTGCAA GGTTGAAATACATATTGGTGGTGCTAAGGGGCCTCCAGACAGGEST: gi|116819630|gb|EC862778.1|EC862778
genomic: GTTATTGGCAGAAAGGGGTCAACGATAATGGCTGTGAAAGAATGTTGCAAgtaaatatat ... ctgtgggcagGGTTGAAATACATATTGGTGGTGCTAAGGGGCCTCCAGACAGG
EST: TTATTGGCAGAAAGGGGTCAACGATAATGCCTGTGAAAGAATGTTGCAA GGTTGAAATACATATTGGTGGTGCTAAGGGGCCTCCATACAGGEST: gi|91052774|gb|EB163192.1|EB163192
genomic: TTATTGGCAGAAAGGGGTCAACGATAATGGCTGTGAAAGAATGTTGCAAgtaaatatat ... ctgtgggcagGGTTGAAATACATATTGGTGGTGCTAAGGGGCCTCCAGACAGG
EST: GTTATTGGCAGAAAGGGGTCAACGATAATGGCTGTGAAAGAATGTTGCAA GGTTGAAATACATATTGGTGGTGCTAAGGGGCCTCCAGCCAGGEST: gi|37392421|gb|CF633460.1|CF633460
genomic: GTTATTGGCAGAAAGGGGTCAACGATAATGGCTGTGAAAGAATGTTGCAAgtaaatatat ... ctgtgggcagGGTTGAAATACATATTGGTGGTGCTAAGGGGCCTCCAGACAGG
EST: GTTATTGGCAGAAAGGGGTCAACGATAATGGCTGTGAAAGAATGTTGCAA GGTTGAAATACATATTGGTGGTGCTAAGGGGCCTCCAGACAGGEST: gi|111189956|gb|EE288092.1|EE288092
genomic: GTTATTGGCAGAAAGGGGTCAACGATAATGGCTGTGAAAGAATGTTGCAAgtaaatatat ... ctgtgggcagGGTTGAAATACATATTGGTGGTGCTAAGGGGCCTCCAGACAGG
EST: GTTATTGGCAGAAAGGGGTCAACGATAATGGCTGTGAAAGAATGTTGCAA GGTTGAAATACATATTGGTGGTGCTAAGGGGCCTCCAGACAGGEST: gi|16918764|gb|BM073885.1|BM073885
genomic: GTTATTGGCAGAAAGGGGTCAACGATAATGGCTGTGAAAGAATGTTGCAAgtaaatatat ... ctgtgggcagGGTTGAAATACATATTGGTGGTGCTAAGGGGCCTCCAGACAGG
EST: GTTATTGGCAGAAAGGGGTCAACGATAATGGCTGTGAAAGAATGTTGCAA GGTTGAAATACATATTGGTGGTGCTAAGGGGCCTCCAGACAGGEST: gi|87298726|gb|DY470729.1|DY470729
genomic: GTTATTGGCAGAAAGGGGTCAACGATAATGGCTGTGAAAGAATGTTGCAAgtaaatatat ... ctgtgggcagGGTTGAAATACATATTGGTGGTGCTAAGGGGCCTCCAGACAGG
EST: GTTATTGGCAGAAAGGGGTCAACGATAATGGCTGTGAAAGAATGTTGCAA GGTTGAAATACATATTGGTGGTGCTAAGGGGCCTCCAGACAGGEST: gi|110531048|gb|EE035232.1|EE035232
genomic: GTTATTGGCAGAAAGGGGTCAACGATAATGGCTGTGAAAGAATGTTGCAAgtaaatatat ... ctgtgggcagGGTTGAAATACATATTGGTGGTGCTAAGGGGCCTCCAGACAGG
EST: GTTATTGGCAGAAAGGGGTCAACGATAATGGCTGTGAAAGAATGTTGCAA GGTTGAAATACATATTGGTGGTGCTAAGGGGCCTCCAGCCAGGEST: gi|74035099|gb|DT535589.1|DT535589
genomic: GTTATTGGCAGAAAGGGGTCAACGATAATGGCTGTGAAAGAATGTTGCAAgtaaatatat ... ctgtgggcagGGTTGAAATACATATTGGTGGTGCTAAGGGGCCTCCAGACAGG
EST: GGGTCAACGATAATGGCTGTGAAAGAATGTTGCAA GGTTGAAATACATATTGGTGGTGCTAAGGGGCCTCCAGACAGG
genomic: GGGTCAACGATAATGGCTGTGAAAGAATGTTGCAAgtaaatatat ... ctgtgggcagGGTTGAAATACATATTGGTGGTGCTAAGGGGCCTCCAGACAGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAGCCGATATCCTGTCAGTCTTAGATGTGCCTCCTGGGAAAATGGGACGAGTTATTGGCAGAAAGGGGTCAACGATAATGGCTGTGAAAGAATGTTGCAAgtaaatatattgagtctgattttgtaaacatcccatcatctatgctgttaaacttcattaatcctctgttattttttgttcctgtgggcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA